CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TIAL1
(
Otolemur garnettii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOGAG00000011417
T39881_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000010225
RRM
9
94
LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK
ENSOGAP00000010225
RRM
114
144
VFVGDLSPEITTEDIKSAFAPFGKISXXXXX
ENSOGAP00000010225
RRM
162
184
XXXDAENAIVHMGGQWLGGRQIR
ENSOGAP00000010225
RRM
222
286
VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK
Links
Other
RRM
family RBPs
Other
Otolemur garnettii
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R003219
Ailuropoda melanoleuca
Ame_R003219
N
0.852
TIAL1
Choloepus hoffmanni
ENSCHOG00000009888
N
0.737
TIAL1
Echinops telfairi
ENSETEG00000020276
N
0.835
TIAL1
Erinaceus europaeus
ENSEEUG00000011861
N
0.834
TIAL1
Loxodonta africana
ENSLAFG00000003412
N
0.852
TIAL1
Meleagris gallopavo
ENSMGAG00000011368
N
0.852
TIA1
Monodelphis domestica
ENSMODG00000011515
I
0.717
TIAL1
Monodelphis domestica
ENSMODG00000008865
I
0.852
TIAL1
Myotis lucifugus
ENSMLUG00000004645
N
0.739
TIAL1
Oryctolagus cuniculus
ENSOCUG00000003783
I
0.852
TIAL1
Sorex araneus
ENSSARG00000012980
N
0.837
TIAL1
Taeniopygia guttata
ENSTGUG00000011148
N
0.852
AAH45086
Xenopus laevis
AAH45086
N
0.747
CAC95017
Xenopus laevis
CAC95017
N
0.758
tial1
Xenopus tropicalis
ENSXETG00000010234
N
0.795