RGD1560481 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000008184 T41057_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ESRP2
M141_0.6 		Homo sapiens UGGGRAD RNAcompete
Ray et al.(2013)
RNCMPT00150 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000010846 RRM 227 296
ENSRNOP00000010846 RRM 328 400
ENSRNOP00000010846 RRM 447 519
ENSRNOP00000062211 RRM 227 296
ENSRNOP00000062211 RRM 328 400
ENSRNOP00000062211 RRM 447 519
ENSRNOP00000063046 RRM 227 296
ENSRNOP00000063046 RRM 328 400
ENSRNOP00000063046 RRM 447 519
ENSRNOP00000063191 RRM 67 136
ENSRNOP00000063191 RRM 168 240
ENSRNOP00000063191 RRM 287 359

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R020475 Ailuropoda melanoleuca Ame_R020475 N 0.000
PPIE Anolis carolinensis ENSACAG00000002688 N 0.000
amel4_ncbi_hmm1701 Apis mellifera amel4_ncbi_hmm1701 N 0.000
amel4_ncbi_hmm44329 Apis mellifera amel4_ncbi_hmm44329 N 0.000
BGIBMGA003414 Bombyx mori BGIBMGA003414 N 0.000
estExt_gwp.C_5080019 Branchiostoma floridae estExt_gwp.C_5080019 N 0.000
estExt_gwp.C_2960041 Branchiostoma floridae estExt_gwp.C_2960041 N 0.000
LOC100400545 Callithrix jacchus ENSCJAG00000002589 N 0.000
PPIE Canis familiaris ENSCAFG00000003031 N 0.000
PPIE Cavia porcellus ENSCPOG00000007365 N 0.000
ENSCING00000003116 Ciona intestinalis ENSCING00000003116 N 0.000
ppie Danio rerio ENSDARG00000059270 N 0.000
PPIE Dasypus novemcinctus ENSDNOG00000002404 N 0.000
LOC100054084 Equus caballus ENSECAG00000008955 N 0.000
LOC100054282 Equus caballus ENSECAG00000024285 N 0.000
PPIE Felis catus ENSFCAG00000006027 N 0.000
PPIE Gallus gallus ENSGALG00000013383 N 0.000
PPIE Gasterosteus aculeatus ENSGACG00000007165 N 0.000
PPIE Gorilla gorilla ENSGGOG00000015783 N 0.000
PPIE Homo sapiens ENSG00000084072 N 0.000
ISCW002449 Ixodes scapularis ISCW002449 N 0.000
estExt_fgenesh2_kg.C_sca_1160007 Lottia gigantea estExt_fgenesh2_kg.C_sca_1160007 N 0.000
PPIE Loxodonta africana ENSLAFG00000028312 N 0.000
PPIE Macaca mulatta ENSMMUG00000018869 N 0.000
PPIE Microcebus murinus ENSMICG00000016676 N 0.000
PPIE Monodelphis domestica ENSMODG00000017659 N 0.000
Ppie Mus musculus ENSMUSG00000028651 N 0.000
PPIE Myotis lucifugus ENSMLUG00000016233 N 0.000
ENSMLUG00000006201 Myotis lucifugus ENSMLUG00000006201 N 0.000
estExt_gwp.C_1130042 Nematostella vectensis estExt_gwp.C_1130042 N 0.000
PPIE Ornithorhynchus anatinus ENSOANG00000010003 N 0.000
PPIE Oryctolagus cuniculus ENSOCUG00000007665 N 0.000
PPIE Oryzias latipes ENSORLG00000017469 N 0.000
PPIE Pan troglodytes ENSPTRG00000000577 N 0.000
PHUM293600 Pediculus humanus PHUM293600 N 0.000
ENSPPYG00000001501 Pongo pygmaeus ENSPPYG00000001501 N 0.000
PPIE Pteropus vampyrus ENSPVAG00000002120 N 0.000
Ppie Rattus norvegicus ENSRNOG00000014762 N 0.000
PPIE Sorex araneus ENSSARG00000005703 N 0.000
XP_799104.2 Strongylocentrotus purpuratus XP_799104.2 N 0.000
XP_001175534.1 Strongylocentrotus purpuratus XP_001175534.1 N 0.000
PPIE Sus scrofa ENSSSCG00000003664 N 0.000
PPIE Taeniopygia guttata ENSTGUG00000001276 N 0.000
Q8QGJ6_FUGRU Takifugu rubripes ENSTRUG00000006308 N 0.000
PPIE Tetraodon nigroviridis ENSTNIG00000016901 N 0.000
amel4_ncbi_hmm1701 Tribolium castaneum amel4_ncbi_hmm1701 N 0.000
PPIE Tursiops truncatus ENSTTRG00000014385 N 0.000
AAI23372 Xenopus laevis AAI23372 N 0.000