CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RGD1560481
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000008184
T41057_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ESRP2
M141_0.6
Homo sapiens
UGGGRAD
RNAcompete
Ray et al.(2013)
RNCMPT00150
0.722
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000010846
RRM
227
296
VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE
ENSRNOP00000010846
RRM
328
400
VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE
ENSRNOP00000010846
RRM
447
519
VRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVE
ENSRNOP00000062211
RRM
227
296
VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE
ENSRNOP00000062211
RRM
328
400
VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE
ENSRNOP00000062211
RRM
447
519
VRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVE
ENSRNOP00000063046
RRM
227
296
VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE
ENSRNOP00000063046
RRM
328
400
VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE
ENSRNOP00000063046
RRM
447
519
VRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVE
ENSRNOP00000063191
RRM
67
136
VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE
ENSRNOP00000063191
RRM
168
240
VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE
ENSRNOP00000063191
RRM
287
359
VRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVE
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
73 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R020475
Ailuropoda melanoleuca
Ame_R020475
N
0.000
PPIE
Anolis carolinensis
ENSACAG00000002688
N
0.000
amel4_ncbi_hmm1701
Apis mellifera
amel4_ncbi_hmm1701
N
0.000
amel4_ncbi_hmm44329
Apis mellifera
amel4_ncbi_hmm44329
N
0.000
BGIBMGA003414
Bombyx mori
BGIBMGA003414
N
0.000
estExt_gwp.C_5080019
Branchiostoma floridae
estExt_gwp.C_5080019
N
0.000
estExt_gwp.C_2960041
Branchiostoma floridae
estExt_gwp.C_2960041
N
0.000
LOC100400545
Callithrix jacchus
ENSCJAG00000002589
N
0.000
PPIE
Canis familiaris
ENSCAFG00000003031
N
0.000
PPIE
Cavia porcellus
ENSCPOG00000007365
N
0.000
ENSCING00000003116
Ciona intestinalis
ENSCING00000003116
N
0.000
ppie
Danio rerio
ENSDARG00000059270
N
0.000
PPIE
Dasypus novemcinctus
ENSDNOG00000002404
N
0.000
LOC100054084
Equus caballus
ENSECAG00000008955
N
0.000
LOC100054282
Equus caballus
ENSECAG00000024285
N
0.000
PPIE
Felis catus
ENSFCAG00000006027
N
0.000
PPIE
Gallus gallus
ENSGALG00000013383
N
0.000
PPIE
Gasterosteus aculeatus
ENSGACG00000007165
N
0.000
PPIE
Gorilla gorilla
ENSGGOG00000015783
N
0.000
PPIE
Homo sapiens
ENSG00000084072
N
0.000
ISCW002449
Ixodes scapularis
ISCW002449
N
0.000
estExt_fgenesh2_kg.C_sca_1160007
Lottia gigantea
estExt_fgenesh2_kg.C_sca_1160007
N
0.000
PPIE
Loxodonta africana
ENSLAFG00000028312
N
0.000
PPIE
Macaca mulatta
ENSMMUG00000018869
N
0.000
PPIE
Microcebus murinus
ENSMICG00000016676
N
0.000
PPIE
Monodelphis domestica
ENSMODG00000017659
N
0.000
Ppie
Mus musculus
ENSMUSG00000028651
N
0.000
PPIE
Myotis lucifugus
ENSMLUG00000016233
N
0.000
ENSMLUG00000006201
Myotis lucifugus
ENSMLUG00000006201
N
0.000
estExt_gwp.C_1130042
Nematostella vectensis
estExt_gwp.C_1130042
N
0.000
PPIE
Ornithorhynchus anatinus
ENSOANG00000010003
N
0.000
PPIE
Oryctolagus cuniculus
ENSOCUG00000007665
N
0.000
PPIE
Oryzias latipes
ENSORLG00000017469
N
0.000
PPIE
Pan troglodytes
ENSPTRG00000000577
N
0.000
PHUM293600
Pediculus humanus
PHUM293600
N
0.000
ENSPPYG00000001501
Pongo pygmaeus
ENSPPYG00000001501
N
0.000
PPIE
Pteropus vampyrus
ENSPVAG00000002120
N
0.000
Ppie
Rattus norvegicus
ENSRNOG00000014762
N
0.000
PPIE
Sorex araneus
ENSSARG00000005703
N
0.000
XP_799104.2
Strongylocentrotus purpuratus
XP_799104.2
N
0.000
XP_001175534.1
Strongylocentrotus purpuratus
XP_001175534.1
N
0.000
PPIE
Sus scrofa
ENSSSCG00000003664
N
0.000
PPIE
Taeniopygia guttata
ENSTGUG00000001276
N
0.000
Q8QGJ6_FUGRU
Takifugu rubripes
ENSTRUG00000006308
N
0.000
PPIE
Tetraodon nigroviridis
ENSTNIG00000016901
N
0.000
amel4_ncbi_hmm1701
Tribolium castaneum
amel4_ncbi_hmm1701
N
0.000
PPIE
Tursiops truncatus
ENSTTRG00000014385
N
0.000
AAI23372
Xenopus laevis
AAI23372
N
0.000