CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TRA2A
(
Sorex araneus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSARG00000012900
T41369_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSARP00000011650
RRM
121
176
LAVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVIFERIDDSRXX
Links
Other
RRM
family RBPs
Other
Sorex araneus
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R009558
Ailuropoda melanoleuca
Ame_R009558
N
0.718
TRA2A
Anolis carolinensis
ENSACAG00000013502
N
0.718
Q2KJ71_BOVIN
Bos taurus
ENSBTAG00000012622
N
0.718
estExt_fgenesh2_pg.C_2170043
Branchiostoma floridae
estExt_fgenesh2_pg.C_2170043
N
0.732
estExt_fgenesh2_pg.C_2170050
Branchiostoma floridae
estExt_fgenesh2_pg.C_2170050
N
0.732
TRA2A
Callithrix jacchus
ENSCJAG00000001509
N
0.718
TRA2A
Canis familiaris
ENSCAFG00000002788
N
0.718
TRA2A
Cavia porcellus
ENSCPOG00000010739
N
0.718
TRA2A
Choloepus hoffmanni
ENSCHOG00000001130
N
0.718
Tra2a
Dipodomys ordii
ENSDORG00000009361
N
0.718
TRA2A
Echinops telfairi
ENSETEG00000007250
N
0.718
LOC100068009
Equus caballus
ENSECAG00000011508
N
0.718
TRA2A
Erinaceus europaeus
ENSEEUG00000015674
N
0.718
Q5ZLY6_CHICK
Gallus gallus
ENSGALG00000010973
N
0.704
TRA2A
Gorilla gorilla
ENSGGOG00000009053
N
0.718
TRA2A
Homo sapiens
ENSG00000164548
N
0.718
TRA2A
Loxodonta africana
ENSLAFG00000006598
N
0.718
Q8WMQ1_MACMU
Macaca mulatta
ENSMMUG00000006286
N
0.718
TRA2A
Macropus eugenii
ENSMEUG00000001202
N
0.718
TRA2A
Meleagris gallopavo
ENSMGAG00000010514
N
0.704
TRA2A
Monodelphis domestica
ENSMODG00000000807
N
0.718
Tra2a
Mus musculus
ENSMUSG00000029817
N
0.718
TRA2A
Myotis lucifugus
ENSMLUG00000013972
N
0.718
TRA2A
Ochotona princeps
ENSOPRG00000007606
N
0.718
TRA2A
Ornithorhynchus anatinus
ENSOANG00000014202
N
0.718
TRA2A
Oryctolagus cuniculus
ENSOCUG00000024139
N
0.718
TRA2A
Otolemur garnettii
ENSOGAG00000009733
N
0.718
TRA2A
Pan troglodytes
ENSPTRG00000018988
N
0.718
ENSPPYG00000017728
Pongo pygmaeus
ENSPPYG00000017728
N
0.718
TRA2A
Procavia capensis
ENSPCAG00000004148
N
0.718
TRA2A
Pteropus vampyrus
ENSPVAG00000011298
N
0.718
Tra2a
Rattus norvegicus
ENSRNOG00000009156
N
0.718
TRA2A
Sus scrofa
ENSSSCG00000015387
N
0.718
TRA2A
Taeniopygia guttata
ENSTGUG00000002795
N
0.704
TRA2A
Tupaia belangeri
ENSTBEG00000013773
N
0.718
TRA2A
Tursiops truncatus
ENSTTRG00000008922
N
0.704
TRA2A
Vicugna pacos
ENSVPAG00000001829
N
0.912
tra2a
Xenopus tropicalis
ENSXETG00000007397
N
0.704