cassava802.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava802.valid.m1 T49476_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava802.valid.m1 RRM 111 189

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002864625.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002022 N 0.861
XM_002879117.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4000699 N 0.835
XM_002877379.1 Arabidopsis lyrata fgenesh2_kg.5__939__AT3G45630.1 N 0.886
AT2G28540 Arabidopsis thaliana AT2G28540-TAIR-G N 0.823
AT3G45630 Arabidopsis thaliana AT3G45630-TAIR-G N 0.899
AT5G60170 Arabidopsis thaliana AT5G60170-TAIR-G N 0.861
PK08517.1 Cannabis sativa PK08517.1 N 0.899
Cucsa.051650 Cucumis sativus Cucsa.051650 N 0.861
Glyma15g04950.1 Glycine max Glyma15g04950.1 N 0.886
Glyma13g40460.1 Glycine max Glyma13g40460.1 N 0.873
Glyma12g07790.1 Glycine max Glyma12g07790.1 N 0.873
Glyma11g15670.1 Glycine max Glyma11g15670.1 N 0.899
LjT39B13.150.nc Lotus japonicus LjT39B13.150.nc N 0.899
MDP0000213471 Malus x domestica MDP0000213471 N 0.797
MDP0000296717 Malus x domestica MDP0000296717 N 0.911
cassava801.valid.m1 Manihot esculenta cassava801.valid.m1 N 1.000
cassava13567.valid.m1 Manihot esculenta cassava13567.valid.m1 N 0.949
cassava12926.valid.m1 Manihot esculenta cassava12926.valid.m1 N 0.734
cassava12925.valid.m1 Manihot esculenta cassava12925.valid.m1 N 0.734
Medtr4g080070 Medicago truncatula Medtr4g080070 N 0.848
Medtr2g111500 Medicago truncatula Medtr2g111500 N 0.886
mgf016475m Mimulus guttatus mgf016475m N 0.772
mgf016286m Mimulus guttatus mgf016286m N 0.823
B9IIZ2_POPTR Populus trichocarpa POPTR_0016s08560 N 0.797
B9HPP2_POPTR Populus trichocarpa POPTR_0009s03130 N 0.949
B9MT79_POPTR Populus trichocarpa POPTR_0006s13450 N 0.810
ppa000664m Prunus persica ppa000664m N 0.924
ppa025065m Prunus persica ppa025065m N 0.759
GSVIVG00025102001 Vitis vinifera GSVIVG00025102001 N 0.899