estExt_Genewise1.C_650028 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_650028 T51297_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_650028 RRM 177 250

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s11505g3t1 Acyrtosiphon pisum DGIL_AUG5s11505g3t1 N 0.743
DGIL_AUG5s8618g4t1 Acyrtosiphon pisum DGIL_AUG5s8618g4t1 N 0.757
Ame_R004744 Ailuropoda melanoleuca Ame_R004744 N 0.720
U2SURP Anolis carolinensis ENSACAG00000009512 N 0.720
AGAP005006 Anopheles gambiae AGAP005006 N 0.716
amel4_ncbi_hmm17771 Apis mellifera amel4_ncbi_hmm17771 N 0.770
BGIBMGA003602 Bombyx mori BGIBMGA003602 N 0.716
Q148C6_BOVIN Bos taurus ENSBTAG00000009154 N 0.720
estExt_fgenesh2_pm.C_3790010 Branchiostoma floridae estExt_fgenesh2_pm.C_3790010 N 0.716
LOC100411013 Callithrix jacchus ENSCJAG00000001639 N 0.720
U2SURP Canis familiaris ENSCAFG00000007973 N 0.720
e_gw1.11.101.1 Capitella teleta e_gw1.11.101.1 N 0.716
U2SURP Cavia porcellus ENSCPOG00000011656 N 0.720
U2SURP Choloepus hoffmanni ENSCHOG00000001300 N 0.720
CpipJ_CPIJ014539 Culex pipiens CpipJ_CPIJ014539 N 0.716
CPIJ014539 Culex quinquefasciatus CPIJ014539 N 0.716
U2SURP Danio rerio ENSDARG00000061490 N 0.720
zgc:163098 Danio rerio ENSDARG00000078911 N 0.703
U2SURP Dasypus novemcinctus ENSDNOG00000006427 N 0.720
GG22076 Drosophila erecta FBgn0114251 N 0.703
GH20523 Drosophila grimshawi FBgn0127986 N 0.703
CG9346 Drosophila melanogaster FBgn0034572 N 0.716
GI21069 Drosophila mojavensis FBgn0143801 N 0.703
GL10142 Drosophila persimilis FBgn0147752 N 0.703
GA21718-RA Drosophila pseudoobscura FBgn0081703 N 0.703
GM15794 Drosophila sechellia FBgn0170710 N 0.716
GD11555 Drosophila simulans FBgn0183296 N 0.716
GJ21992 Drosophila virilis FBgn0209106 N 0.703
GE12157 Drosophila yakuba FBgn0229923 N 0.703
U2SURP Echinops telfairi ENSETEG00000000149 N 0.720
LOC100051188 Equus caballus ENSECAG00000022460 N 0.720
U2SURP Erinaceus europaeus ENSEEUG00000013553 N 0.720
LOC424773 Gallus gallus ENSGALG00000002612 N 0.720
U2SURP Gasterosteus aculeatus ENSGACG00000003763 N 0.720
U2SURP Gorilla gorilla ENSGGOG00000005563 N 0.720
U2SURP Homo sapiens ENSG00000163714 N 0.720
U2SURP Loxodonta africana ENSLAFG00000002566 N 0.720
U2SURP Macaca mulatta ENSMMUG00000002775 N 0.720
U2SURP Macropus eugenii ENSMEUG00000000127 N 0.720
U2SURP Meleagris gallopavo ENSMGAG00000006549 N 0.720
XM_001372164.1 Monodelphis domestica ENSMODG00000021242 N 0.720
2610101N10Rik Mus musculus ENSMUSG00000032407 N 0.720
U2SURP Myotis lucifugus ENSMLUG00000002920 N 0.720
nasonia_NCBI_hmm274824 Nasonia vitripennis nasonia_NCBI_hmm274824 N 0.743
U2SURP Ornithorhynchus anatinus ENSOANG00000003644 N 0.720
U2SURP Oryctolagus cuniculus ENSOCUG00000012121 N 0.720
U2SURP Oryzias latipes ENSORLG00000010235 N 0.720
U2SURP Pan troglodytes ENSPTRG00000015489 N 0.720
PHUM176690 Pediculus humanus PHUM176690 N 0.770
ENSPPYG00000014178 Pongo pygmaeus ENSPPYG00000014178 N 0.720
U2SURP Procavia capensis ENSPCAG00000015251 N 0.720
U2SURP Pteropus vampyrus ENSPVAG00000016077 N 0.720
RGD1307882 Rattus norvegicus ENSRNOG00000008607 N 0.720
Sjc_0023880 Schistosoma japonicum Sjc_0023880 N 0.716
Smp_161730 Schistosoma mansoni Smp_161730 N 0.716
XP_001179024.1 Strongylocentrotus purpuratus XP_001179024.1 N 0.703
XP_794306.2 Strongylocentrotus purpuratus XP_794306.2 N 0.703
U2SURP Sus scrofa ENSSSCG00000011684 N 0.720
U2SURP Taeniopygia guttata ENSTGUG00000008687 N 0.720
U2SURP Takifugu rubripes ENSTRUG00000017810 N 0.720
U2SURP Tetraodon nigroviridis ENSTNIG00000012767 N 0.720
amel4_ncbi_hmm17771 Tribolium castaneum amel4_ncbi_hmm17771 N 0.770
U2SURP Tupaia belangeri ENSTBEG00000016313 N 0.720
U2SURP Tursiops truncatus ENSTTRG00000017170 N 0.720
U2SURP Vicugna pacos ENSVPAG00000004697 N 0.720