CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G152111
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G152111
T54161_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G152111_P01
RRM
65
135
LYVTGLSSRVTERDVKDYFSKHGRVVGCHVVLEPHTRVSRGFAFVSMDTVEEAERCIKYLNGSVMEGRNIT
GRMZM2G152111_P02
RRM
65
135
LYVTGLSSRVTERDVKDYFSKHGRVVGCHVVLEPHTRVSRGFAFVSMDTVEEAERCIKYLNGSVMEGRNIT
GRMZM2G152111_P03
RRM
65
135
LYVTGLSSRVTERDVKDYFSKHGRVVGCHVVLEPHTRVSRGFAFVSMDTVEEAERCIKYLNGSVMEGRNIT
GRMZM2G152111_P04
RRM
65
135
LYVTGLSSRVTERDVKDYFSKHGRVVGCHVVLEPHTRVSRGFAFVSMDTVEEAERCIKYLNGSVMEGRNIT
GRMZM2G152111_P06
RRM
68
138
LYVTGLSSRVTERDVKDYFSKHGRVVGCHVVLEPHTRVSRGFAFVSMDTVEEAERCIKYLNGSVMEGRNIT
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI1G29990
Brachypodium distachyon
BRADI1G29990
N
0.775
PK15963.1
Cannabis sativa
PK15963.1
N
0.704
Glyma16g23010.1
Glycine max
Glyma16g23010.1
N
0.704
Glyma02g04980.1
Glycine max
Glyma02g04980.1
N
0.704
Glyma01g36670.1
Glycine max
Glyma01g36670.1
N
0.718
Medtr5g023040
Medicago truncatula
Medtr5g023040
N
0.704
Medtr8g088990
Medicago truncatula
Medtr8g088990
N
0.704
BGIOSIBCE023334
Oryza indica
BGIOSIBCE023334
N
0.887
LOC_Os06g50890
Oryza sativa
LOC_Os06g50890
N
0.887
PDK_20s1771821g002
Phoenix dactylifera
PDK_20s1771821g002
N
0.732
SB10G030460
Sorghum bicolor
Sb10g030460
N
0.958