Medtr8g139830 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr8g139830 T54618_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr8g139830.1 RRM 50 120
Medtr8g139830.2 RRM 50 87

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SCL28 Arabidopsis thaliana AT5G18810-TAIR-G N 0.775
BRADI1G61730 Brachypodium distachyon BRADI1G61730 N 0.704
PK03835.1 Cannabis sativa PK03835.1 N 0.915
Cucsa.253680 Cucumis sativus Cucsa.253680 N 0.901
Glyma17g02470.1 Glycine max Glyma17g02470.1 N 0.944
Glyma07g38270.1 Glycine max Glyma07g38270.1 N 0.944
chr4.LjT32J05.120.nc Lotus japonicus chr4.LjT32J05.120.nc N 0.944
MDP0000124152 Malus x domestica MDP0000124152 N 0.775
cassava19117.valid.m1 Manihot esculenta cassava19117.valid.m1 N 0.887
cassava19116.valid.m1 Manihot esculenta cassava19116.valid.m1 N 0.887
mgf013231m Mimulus guttatus mgf013231m N 0.761
BGIOSIBCE011211 Oryza indica BGIOSIBCE011211 N 0.732
LOC_Os03g24890 Oryza sativa LOC_Os03g24890 N 0.732
A9PDA2_POPTR Populus trichocarpa POPTR_0010s02700 N 0.817
B9HM84_POPTR Populus trichocarpa POPTR_0008s20120 N 0.803
ppa010343m Prunus persica ppa010343m N 0.915
ppa010360m Prunus persica ppa010360m N 0.915
29726.m003960 Ricinus communis 29726.m003960 N 0.901
GSVIVG00022010001 Vitis vinifera GSVIVG00022010001 N 0.817