Cucsa.253680 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.253680 T49609_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.253680.1 RRM 52 122
Cucsa.253680.2 RRM 52 122

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa010360m Prunus persica ppa010360m N 0.944
ppa010343m Prunus persica ppa010343m N 0.944
Glyma07g38270.1 Glycine max Glyma07g38270.1 N 0.915
PK03835.1 Cannabis sativa PK03835.1 N 0.915
Glyma17g02470.1 Glycine max Glyma17g02470.1 N 0.915
chr4.LjT32J05.120.nc Lotus japonicus chr4.LjT32J05.120.nc N 0.901
Medtr8g139830 Medicago truncatula Medtr8g139830 N 0.901
GSVIVG00022010001 Vitis vinifera GSVIVG00022010001 N 0.887
29726.m003960 Ricinus communis 29726.m003960 N 0.873
cassava19117.valid.m1 Manihot esculenta cassava19117.valid.m1 N 0.873
cassava19116.valid.m1 Manihot esculenta cassava19116.valid.m1 N 0.873
MDP0000124152 Malus x domestica MDP0000124152 N 0.817
B9HM84_POPTR Populus trichocarpa POPTR_0008s20120 N 0.803
A9PDA2_POPTR Populus trichocarpa POPTR_0010s02700 N 0.789
SCL28 Arabidopsis thaliana AT5G18810-TAIR-G N 0.789
BGIOSIBCE011211 Oryza indica BGIOSIBCE011211 N 0.775
LOC_Os03g24890 Oryza sativa LOC_Os03g24890 N 0.775
mgf013231m Mimulus guttatus mgf013231m N 0.761
BRADI1G61730 Brachypodium distachyon BRADI1G61730 N 0.718
SB01G034590 Sorghum bicolor Sb01g034590 N 0.718