A9PDA2_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0010s02700 T45589_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s02700.1 RRM 50 120

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HM84_POPTR Populus trichocarpa POPTR_0008s20120 N 0.901
29726.m003960 Ricinus communis 29726.m003960 N 0.887
cassava19117.valid.m1 Manihot esculenta cassava19117.valid.m1 N 0.873
cassava19116.valid.m1 Manihot esculenta cassava19116.valid.m1 N 0.873
SCL28 Arabidopsis thaliana AT5G18810-TAIR-G N 0.845
chr4.LjT32J05.120.nc Lotus japonicus chr4.LjT32J05.120.nc N 0.831
Glyma17g02470.1 Glycine max Glyma17g02470.1 N 0.831
Glyma07g38270.1 Glycine max Glyma07g38270.1 N 0.831
Medtr8g139830 Medicago truncatula Medtr8g139830 N 0.817
PK03835.1 Cannabis sativa PK03835.1 N 0.817
ppa010360m Prunus persica ppa010360m N 0.803
ppa010343m Prunus persica ppa010343m N 0.803
Cucsa.253680 Cucumis sativus Cucsa.253680 N 0.789
mgf013231m Mimulus guttatus mgf013231m N 0.775
GSVIVG00022010001 Vitis vinifera GSVIVG00022010001 N 0.746
SB01G034590 Sorghum bicolor Sb01g034590 N 0.704