CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Minc03171
(
Meloidogyne incognita
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Minc03171
T57776_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc03171
RRM
13
78
VYVGGLPEDATSEELDDAFHKFGRIRKIWVARRPPGFAFVEFDDHRDAEDAVRSMDGTRICGVKAR
Links
Other
RRM
family RBPs
Other
Meloidogyne incognita
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Bm1_55500
Brugia malayi
Bm1_55500
N
0.818
CBN22494
Caenorhabditis brenneri
CBN22494
N
0.788
CBG17675
Caenorhabditis briggsae
CBG17675
N
0.788
rsp-6
Caenorhabditis elegans
C33H5.12
N
0.788
CJA16130
Caenorhabditis japonica
CJA16130
N
0.773
CRE10826
Caenorhabditis remanei
CRE10826
N
0.788
LOAG_10698
Loa loa
LOAG_10698
N
0.727
LOAG_10696
Loa loa
LOAG_10696
N
0.818
Minc17168
Meloidogyne incognita
Minc17168
N
0.742
Minc17097
Meloidogyne incognita
Minc17097
N
0.742
Minc05171
Meloidogyne incognita
Minc05171
N
0.894
Minc03199
Meloidogyne incognita
Minc03199
N
1.000
Ppa-rsp-6
Pristionchus pacificus
PPA22370
N
0.848
PPA16762
Pristionchus pacificus
PPA16762
N
0.758
WUBG_04041
Wuchereria bancrofti
WUBG_04041
N
0.712
WUBG_04043
Wuchereria bancrofti
WUBG_04043
N
0.818