CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBN22494
(
Caenorhabditis brenneri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CBN22494
T34072_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBN22494
RRM
5
70
VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRAR
Links
Other
RRM
family RBPs
Other
Caenorhabditis brenneri
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
rsp-6
Caenorhabditis elegans
C33H5.12
N
1.000
CRE10826
Caenorhabditis remanei
CRE10826
N
1.000
CBG17675
Caenorhabditis briggsae
CBG17675
N
1.000
CJA16130
Caenorhabditis japonica
CJA16130
N
0.970
CRE10821
Caenorhabditis remanei
CRE10821
N
0.879
LOAG_10696
Loa loa
LOAG_10696
N
0.864
WUBG_04043
Wuchereria bancrofti
WUBG_04043
N
0.864
Bm1_55500
Brugia malayi
Bm1_55500
N
0.864
Ppa-rsp-6
Pristionchus pacificus
PPA22370
N
0.818
Minc05171
Meloidogyne incognita
Minc05171
N
0.788
Minc03171
Meloidogyne incognita
Minc03171
N
0.788
Minc03199
Meloidogyne incognita
Minc03199
N
0.788
LOAG_10698
Loa loa
LOAG_10698
N
0.727
PPA16762
Pristionchus pacificus
PPA16762
N
0.712
WUBG_04041
Wuchereria bancrofti
WUBG_04041
N
0.712