CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOAG_10696
(
Loa loa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
LOAG_10696
T29650_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOAG_10696T0
RRM
12
77
VYVGGLPQDATSQELEDAFNRFGRIRKVWVARRPPGFAFVEFEDARDAEDAVKALDGTRICGVRAR
Links
Other
RRM
family RBPs
Other
Loa loa
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Bm1_55500
Brugia malayi
Bm1_55500
N
1.000
WUBG_04043
Wuchereria bancrofti
WUBG_04043
N
1.000
CBG17675
Caenorhabditis briggsae
CBG17675
N
0.864
rsp-6
Caenorhabditis elegans
C33H5.12
N
0.864
CRE10826
Caenorhabditis remanei
CRE10826
N
0.864
CBN22494
Caenorhabditis brenneri
CBN22494
N
0.864
CJA16130
Caenorhabditis japonica
CJA16130
N
0.848
Ppa-rsp-6
Pristionchus pacificus
PPA22370
N
0.833
Minc03171
Meloidogyne incognita
Minc03171
N
0.818
Minc03199
Meloidogyne incognita
Minc03199
N
0.818
Minc05171
Meloidogyne incognita
Minc05171
N
0.803
PPA16762
Pristionchus pacificus
PPA16762
N
0.803
LOAG_10698
Loa loa
LOAG_10698
N
0.788
WUBG_04041
Wuchereria bancrofti
WUBG_04041
N
0.773
nasonia_NCBI_hmm124154
Nasonia vitripennis
nasonia_NCBI_hmm124154
I
0.742
CRE10821
Caenorhabditis remanei
CRE10821
N
0.742