CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GLRG_07196
(
Colletotrichum graminicola
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
GLRG_07196
T59920_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLRG_07196T0
S1
226
301
APQLHKIYGGHVTGIKDFGAFVNIHGVRGKVDGLVHISRLVDGQRVNHPSDLLTKGQEVWVKVVSMEGNRIGLSMK
Links
Other
S1
family RBPs
Other
Colletotrichum graminicola
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_13853
Botrytis cinerea
BC1G_13853
N
0.737
CPSG_07949
Coccidioides posadasii
CPSG_07949
N
0.711
estExt_fgenesh1_pg.C_30380
Cryphonectria parasitica
estExt_fgenesh1_pg.C_30380
N
0.750
MGG_08807
Magnaporthe oryzae
MGG_08807
N
0.711
gw1.1.76.1
Myceliophthora thermophila
gw1.1.76.1
N
0.750
NCU06318
Neurospora crassa
NCU06318
N
0.750
estExt_fgenesh2_pg.C_30399
Neurospora discreta
estExt_fgenesh2_pg.C_30399
N
0.763
estExt_fgenesh1_pg.C_40021
Neurospora tetrasperma
estExt_fgenesh1_pg.C_40021
N
0.737
Pa_6_9920
Podospora anserina
Pa_6_9920
N
0.750
SS1G_13866
Sclerotinia sclerotiorum
SS1G_13866
N
0.750
fgenesh1_pm.C_scaffold_24000056
Trichoderma reesei
fgenesh1_pm.C_scaffold_24000056
N
0.789
fgenesh1_pg.C_scaffold_24000012
Trichoderma virens
fgenesh1_pg.C_scaffold_24000012
N
0.776
UREG_00720
Uncinocarpus reesii
UREG_00720
N
0.711