CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
srbd1
(
Danio rerio
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
ENSDARG00000079827
T60318_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000098290
S1
77
154
DLHDGMVLTGRVTNTALFGAFVDIGVGRSGLIPKRFITPEKLPVDQRRRSLALGPGERVEVRVMNVDIQRNRITLDLI
Links
Other
S1
family RBPs
Other
Danio rerio
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK10508.1
Cannabis sativa
PK10508.1
N
0.000
Glyma12g05490.1
Glycine max
Glyma12g05490.1
N
0.000
Glyma13g42060.1
Glycine max
Glyma13g42060.1
N
0.000
MDP0000252655
Malus x domestica
MDP0000252655
N
0.000
MDP0000252696
Malus x domestica
MDP0000252696
N
0.000
Medtr4g092490
Medicago truncatula
Medtr4g092490
N
0.000
ppa000835m
Prunus persica
ppa000835m
N
0.000
29577.m000447
Ricinus communis
29577.m000447
N
0.000