CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma13g42060.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma13g42060.1
T52836_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma13g42060.1
RRM
20
84
LWVGNLPPEVIDSNLMELFAPYGSLDSLISYSSRTFAFVLFRRVEDAKAAKSNLQGAWLRGFQIR
Glyma13g42060.1
RRM
97
160
LWVGGFSPAVAREDLEAEFWKFGKIEDFKFFVDRGTACVEFLNLDDAVRAMKVMNGKRLGGGQI
Glyma13g42060.1
RRM
194
253
PSFQIDEQMLHNAMILFGEIDKIKIFPSRHYSFVEFRSTDEAQRAKEGLQGRLFNDPRIT
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma12g05490.1
Glycine max
Glyma12g05490.1
N
0.741
Glyma11g13490.1
Glycine max
Glyma11g13490.1
N
0.741
ppa000835m
Prunus persica
ppa000835m
N
0.725
MDP0000252696
Malus x domestica
MDP0000252696
N
0.720
PK10508.1
Cannabis sativa
PK10508.1
N
0.720
MDP0000252655
Malus x domestica
MDP0000252655
N
0.714
29577.m000447
Ricinus communis
29577.m000447
N
0.709
Medtr4g092490
Medicago truncatula
Medtr4g092490
N
0.709