CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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U2AF1L4
(
Canis familiaris
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSCAFG00000006856
T00452_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000010223
RRM
119
178
FEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVH
ENSCAFP00000010223
CCCH ZF
186
212
DFRESCCRQYEMGECTRGGFCNFMHLR
Links
Other
CCCH ZF,RRM
family RBPs
Other
Canis familiaris
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
U2af1l4
Rattus norvegicus
ENSRNOG00000024497
N
1.000
ENSPPYG00000011463
Pongo pygmaeus
ENSPPYG00000011463
N
0.874
U2AF1
Pan troglodytes
ENSPTRG00000013952
N
0.874
U2AF1
Choloepus hoffmanni
ENSCHOG00000011359
N
0.874
U2AF1
Macaca mulatta
ENSMMUG00000022769
N
0.874
LOC100415206
Callithrix jacchus
ENSCJAG00000015843
N
0.874
U2AF1
Homo sapiens
ENSG00000160201
N
0.874
U2AF1
Gasterosteus aculeatus
ENSGACG00000014605
N
0.862
ENSORLG00000008857
Oryzias latipes
ENSORLG00000008857
N
0.816
U2AF1
Otolemur garnettii
ENSOGAG00000016504
N
0.805