LOC100415206 (Callithrix jacchus)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		ENSCJAG00000015843 T00466_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000029213 RRM 39 97
ENSCJAP00000029213 CCCH ZF 105 131
ENSCJAP00000029219 CCCH ZF 13 39
ENSCJAP00000029219 RRM 83 141
ENSCJAP00000029219 CCCH ZF 149 175

Links

Other CCCH ZF,RRM family RBPs
Other Callithrix jacchus RBPs

104 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000011463 Pongo pygmaeus ENSPPYG00000011463 N 1.000
U2AF1 Choloepus hoffmanni ENSCHOG00000011359 N 1.000
U2AF1 Pan troglodytes ENSPTRG00000013952 N 1.000
U2AF1 Homo sapiens ENSG00000160201 N 1.000
U2AF1 Macaca mulatta ENSMMUG00000022769 N 1.000
U2AF1_BOVIN Bos taurus ENSBTAG00000011645 N 0.982
U2AF1 Canis familiaris ENSCAFG00000010572 N 0.982
U2AF1 Microcebus murinus ENSMICG00000013835 N 0.982
U2AF1 Meleagris gallopavo ENSMGAG00000014587 N 0.982
U2af1 Mus musculus ENSMUSG00000061613 N 0.982
U2AF1 Ornithorhynchus anatinus ENSOANG00000006463 N 0.982
U2AF1 Taeniopygia guttata ENSTGUG00000005826 N 0.982
U2AF1 Tarsius syrichta ENSTSYG00000006799 N 0.982
Ame_R019749 Ailuropoda melanoleuca Ame_R019749 N 0.982
U2AF1 Anolis carolinensis ENSACAG00000017836 N 0.982
U2AF1 Monodelphis domestica ENSMODG00000021029 N 0.982
U2AF1 Loxodonta africana ENSLAFG00000011460 N 0.982
LOC100057570 Equus caballus ENSECAG00000015558 N 0.982
U2AF1 Echinops telfairi ENSETEG00000002200 N 0.982
Q98TR0_CHICK Gallus gallus ENSGALG00000016198 N 0.982
U2AF1 Cavia porcellus ENSCPOG00000004893 N 0.982
U2AF1 Gasterosteus aculeatus ENSGACG00000014605 N 0.977
u2af1 Danio rerio ENSDARG00000015325 N 0.973
U2af1 Dipodomys ordii ENSDORG00000000211 N 0.973
U2AF1 Pteropus vampyrus ENSPVAG00000016992 N 0.973
U2AF1 Tetraodon nigroviridis ENSTNIG00000008311 N 0.973
U2AF1 Tupaia belangeri ENSTBEG00000000453 N 0.973
U2AF1 Spermophilus tridecemlineatus ENSSTOG00000012766 N 0.973
U2AF1 Oryzias latipes ENSORLG00000006182 N 0.973
U2AF1 Myotis lucifugus ENSMLUG00000014756 N 0.973
U2AF1 Vicugna pacos ENSVPAG00000002856 N 0.973
ENSGACG00000003454 Gasterosteus aculeatus ENSGACG00000003454 N 0.973
AAI08559 Xenopus laevis AAI08559 N 0.965
U2AF1 Procavia capensis ENSPCAG00000013413 N 0.956
e_gw.8.587.1 Branchiostoma floridae e_gw.8.587.1 N 0.939
e_gw.8.588.1 Branchiostoma floridae e_gw.8.588.1 N 0.939
U2AF1 Takifugu rubripes ENSTRUG00000013815 N 0.938
ENSORLG00000008857 Oryzias latipes ENSORLG00000008857 N 0.930
U2AF1 Otolemur garnettii ENSOGAG00000016504 N 0.907
e_gw.121.26.1 Nematostella vectensis e_gw.121.26.1 N 0.903
U2AF4_BOVIN Bos taurus ENSBTAG00000023610 N 0.886
U2af1l4 Rattus norvegicus ENSRNOG00000024497 N 0.886
ENSCING00000004086 Ciona intestinalis ENSCING00000004086 N 0.886
U2AF1L4 Loxodonta africana ENSLAFG00000012923 N 0.886
ENSCSAVG00000000329 Ciona savignyi ENSCSAVG00000000329 N 0.886
U2af1l4 Mus musculus ENSMUSG00000078765 N 0.886
U2AF1L4 Oryctolagus cuniculus ENSOCUG00000013434 N 0.886
U2AF1L4 Equus caballus ENSECAG00000017941 N 0.886
U2AF1L4 Sus scrofa ENSSSCG00000002896 N 0.886
XP_001191705.1 Strongylocentrotus purpuratus XP_001191705.1 N 0.880
U2AF1L4 Monodelphis domestica ENSMODG00000014003 N 0.877
ENSGGOG00000025487 Gorilla gorilla ENSGGOG00000025487 N 0.876
U2AF1L4 Canis familiaris ENSCAFG00000006856 N 0.874
U2AF1L4 Gorilla gorilla ENSGGOG00000016828 N 0.868
estExt_Genewise1.C_3650003 Capitella teleta estExt_Genewise1.C_3650003 N 0.868
nasonia_NCBI_hmm622923 Nasonia vitripennis nasonia_NCBI_hmm622923 N 0.867
PHUM349680 Pediculus humanus PHUM349680 N 0.867
BGIBMGA010333 Bombyx mori BGIBMGA010333 N 0.867
e_gw1.49.82.1 Lottia gigantea e_gw1.49.82.1 N 0.862
184981 Helobdella robusta 184981 N 0.860
U2AF1L4 Homo sapiens ENSG00000161265 N 0.860
amel4_ncbi_hmm38272 Apis mellifera amel4_ncbi_hmm38272 N 0.858
XP_002156010.1 Hydra magnipapillata XP_002156010.1 N 0.858
e_gw1.30.183.1 Daphnia pulex e_gw1.30.183.1 N 0.858
Aqu1.219575 Amphimedon queenslandica Aqu1.219575 N 0.851
CpipJ_CPIJ016711 Culex pipiens CpipJ_CPIJ016711 N 0.850
CPIJ016711 Culex quinquefasciatus CPIJ016711 N 0.850
CPIJ003901 Culex quinquefasciatus CPIJ003901 N 0.850
AGAP002956 Anopheles gambiae AGAP002956 N 0.850
AAEL006713 Aedes aegypti AAEL006713 N 0.850
CpipJ_CPIJ003901 Culex pipiens CpipJ_CPIJ003901 N 0.850
GI15018 Drosophila mojavensis FBgn0137768 N 0.832
GL25824 Drosophila persimilis FBgn0163408 N 0.832
GM16679 Drosophila sechellia FBgn0171592 N 0.832
GD22967 Drosophila simulans FBgn0194360 N 0.832
GH10217 Drosophila grimshawi FBgn0117698 N 0.832
GG24659 Drosophila erecta FBgn0116791 N 0.832
U2af38 Drosophila melanogaster FBgn0017457 N 0.832
GA17536-RA Drosophila pseudoobscura FBgn0077547 N 0.832
GF24893 Drosophila ananassae FBgn0101885 N 0.832
GK14823 Drosophila willistoni FBgn0216828 N 0.832
GJ17240 Drosophila virilis FBgn0204416 N 0.832
GE16227 Drosophila yakuba FBgn0233767 N 0.832
U2AF1L4 Pan troglodytes ENSPTRG00000010860 N 0.824
e_gw1.35.104.1 Trichoplax adhaerens e_gw1.35.104.1 N 0.822
Q9YHU4_FUGRU Takifugu rubripes ENSTRUG00000010538 N 0.818
ENSTNIG00000013914 Tetraodon nigroviridis ENSTNIG00000013914 N 0.818
Smp_093100 Schistosoma mansoni Smp_093100 N 0.818
ENSGGOG00000000469 Gorilla gorilla ENSGGOG00000000469 N 0.816
PTSG_08923 Salpingoeca rosetta PTSG_08923 N 0.805
XP_002167624.1 Hydra magnipapillata XP_002167624.1 N 0.796
Sjc_0045900 Schistosoma japonicum Sjc_0045900 N 0.786
ISCW019664 Ixodes scapularis ISCW019664 N 0.741
CAOG_00458 Capsaspora owczarzaki CAOG_00458 N 0.739
DGIL_AUG5s4512g5t1 Acyrtosiphon pisum DGIL_AUG5s4512g5t1 N 0.733
Bm1_55710 Brugia malayi Bm1_55710 N 0.733
WUBG_02195 Wuchereria bancrofti WUBG_02195 N 0.733
LOAG_00486 Loa loa LOAG_00486 N 0.733
SPPG_02695 Spizellomyces punctatus SPPG_02695 N 0.723
CBG00419 Caenorhabditis briggsae CBG00419 N 0.718
CBN00865 Caenorhabditis brenneri CBN00865 N 0.718
uaf-2 Caenorhabditis elegans Y116A8C.35 N 0.718
CRE28738 Caenorhabditis remanei CRE28738 N 0.718
Minc02944 Meloidogyne incognita Minc02944 N 0.704