U2AF1 (Pan troglodytes)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		ENSPTRG00000013952 T00601_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000006938 CCCH ZF 13 39
ENSPTRP00000006938 RRM 83 141
ENSPTRP00000006938 CCCH ZF 149 175
ENSPTRP00000024015 CCCH ZF 13 39
ENSPTRP00000024015 RRM 83 141
ENSPTRP00000024015 CCCH ZF 149 175
ENSPTRP00000059229 RRM 10 68
ENSPTRP00000059229 CCCH ZF 76 102

Links

Other CCCH ZF,RRM family RBPs
Other Pan troglodytes RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100415206 Callithrix jacchus ENSCJAG00000015843 N 1.000
ENSPPYG00000011463 Pongo pygmaeus ENSPPYG00000011463 N 1.000
U2AF1 Cavia porcellus ENSCPOG00000004893 N 1.000
U2AF1 Echinops telfairi ENSETEG00000002200 N 1.000
U2AF1 Homo sapiens ENSG00000160201 N 1.000
U2AF1_BOVIN Bos taurus ENSBTAG00000011645 N 1.000
U2AF1 Anolis carolinensis ENSACAG00000017836 N 1.000
U2AF1 Monodelphis domestica ENSMODG00000021029 N 1.000
U2AF1 Macaca mulatta ENSMMUG00000022769 N 1.000
U2af1 Mus musculus ENSMUSG00000061613 N 1.000
U2AF1 Microcebus murinus ENSMICG00000013835 N 1.000
Q98TR0_CHICK Gallus gallus ENSGALG00000016198 N 1.000
U2AF1 Choloepus hoffmanni ENSCHOG00000011359 N 1.000
U2AF1 Taeniopygia guttata ENSTGUG00000005826 N 1.000
U2AF1 Tarsius syrichta ENSTSYG00000006799 N 1.000
U2AF1 Loxodonta africana ENSLAFG00000011460 N 1.000
u2af1 Danio rerio ENSDARG00000015325 N 0.991
U2AF1 Tetraodon nigroviridis ENSTNIG00000008311 N 0.991
ENSGACG00000003454 Gasterosteus aculeatus ENSGACG00000003454 N 0.991
U2AF1 Oryzias latipes ENSORLG00000006182 N 0.991
U2AF1 Gasterosteus aculeatus ENSGACG00000014605 N 0.982
AAI08559 Xenopus laevis AAI08559 N 0.982
U2AF1 Spermophilus tridecemlineatus ENSSTOG00000012766 N 0.973
Ame_R019749 Ailuropoda melanoleuca Ame_R019749 N 0.973
U2af1 Dipodomys ordii ENSDORG00000000211 N 0.973
LOC100057570 Equus caballus ENSECAG00000015558 N 0.973
U2AF1 Pteropus vampyrus ENSPVAG00000016992 N 0.973
U2AF1 Procavia capensis ENSPCAG00000013413 N 0.973
U2AF1 Canis familiaris ENSCAFG00000010572 N 0.973
U2AF1 Ornithorhynchus anatinus ENSOANG00000006463 N 0.973
U2AF1 Vicugna pacos ENSVPAG00000002856 N 0.973
U2AF1 Meleagris gallopavo ENSMGAG00000014587 N 0.973
U2AF1 Tupaia belangeri ENSTBEG00000000453 N 0.973
U2AF1 Myotis lucifugus ENSMLUG00000014756 N 0.973
e_gw.8.588.1 Branchiostoma floridae e_gw.8.588.1 N 0.956
e_gw.8.587.1 Branchiostoma floridae e_gw.8.587.1 N 0.956
U2AF1 Takifugu rubripes ENSTRUG00000013815 N 0.956
ENSORLG00000008857 Oryzias latipes ENSORLG00000008857 N 0.947
e_gw.121.26.1 Nematostella vectensis e_gw.121.26.1 N 0.920
U2AF1 Otolemur garnettii ENSOGAG00000016504 N 0.907
U2AF1L4 Equus caballus ENSECAG00000017941 N 0.904
U2af1l4 Mus musculus ENSMUSG00000078765 N 0.904
ENSCSAVG00000000329 Ciona savignyi ENSCSAVG00000000329 N 0.904
U2AF1L4 Sus scrofa ENSSSCG00000002896 N 0.904
ENSCING00000004086 Ciona intestinalis ENSCING00000004086 N 0.904
U2af1l4 Rattus norvegicus ENSRNOG00000024497 N 0.904
U2AF1L4 Oryctolagus cuniculus ENSOCUG00000013434 N 0.904
U2AF4_BOVIN Bos taurus ENSBTAG00000023610 N 0.904
U2AF1L4 Loxodonta africana ENSLAFG00000012923 N 0.904
U2AF1L4 Monodelphis domestica ENSMODG00000014003 N 0.895
U2AF1L4 Gorilla gorilla ENSGGOG00000016828 N 0.886
estExt_Genewise1.C_3650003 Capitella teleta estExt_Genewise1.C_3650003 N 0.886
BGIBMGA010333 Bombyx mori BGIBMGA010333 N 0.885
ENSGGOG00000025487 Gorilla gorilla ENSGGOG00000025487 N 0.885
nasonia_NCBI_hmm622923 Nasonia vitripennis nasonia_NCBI_hmm622923 N 0.885
PHUM349680 Pediculus humanus PHUM349680 N 0.885
XP_001191705.1 Strongylocentrotus purpuratus XP_001191705.1 N 0.880
e_gw1.49.82.1 Lottia gigantea e_gw1.49.82.1 N 0.879
184981 Helobdella robusta 184981 N 0.877
U2AF1L4 Homo sapiens ENSG00000161265 N 0.877
e_gw1.30.183.1 Daphnia pulex e_gw1.30.183.1 N 0.876
amel4_ncbi_hmm38272 Apis mellifera amel4_ncbi_hmm38272 N 0.876
U2AF1L4 Canis familiaris ENSCAFG00000006856 N 0.874
Aqu1.219575 Amphimedon queenslandica Aqu1.219575 N 0.868
AGAP002956 Anopheles gambiae AGAP002956 N 0.867
CPIJ003901 Culex quinquefasciatus CPIJ003901 N 0.867
CpipJ_CPIJ016711 Culex pipiens CpipJ_CPIJ016711 N 0.867
CpipJ_CPIJ003901 Culex pipiens CpipJ_CPIJ003901 N 0.867
AAEL006713 Aedes aegypti AAEL006713 N 0.867
CPIJ016711 Culex quinquefasciatus CPIJ016711 N 0.867
XP_002156010.1 Hydra magnipapillata XP_002156010.1 N 0.858
GL25824 Drosophila persimilis FBgn0163408 N 0.850
GI15018 Drosophila mojavensis FBgn0137768 N 0.850
GG24659 Drosophila erecta FBgn0116791 N 0.850
GM16679 Drosophila sechellia FBgn0171592 N 0.850
GH10217 Drosophila grimshawi FBgn0117698 N 0.850
GJ17240 Drosophila virilis FBgn0204416 N 0.850
U2af38 Drosophila melanogaster FBgn0017457 N 0.850
GA17536-RA Drosophila pseudoobscura FBgn0077547 N 0.850
GE16227 Drosophila yakuba FBgn0233767 N 0.850
GK14823 Drosophila willistoni FBgn0216828 N 0.850
GF24893 Drosophila ananassae FBgn0101885 N 0.850
GD22967 Drosophila simulans FBgn0194360 N 0.850
U2AF1L4 Pan troglodytes ENSPTRG00000010860 N 0.840
e_gw1.35.104.1 Trichoplax adhaerens e_gw1.35.104.1 N 0.839
Smp_093100 Schistosoma mansoni Smp_093100 N 0.835
ENSTNIG00000013914 Tetraodon nigroviridis ENSTNIG00000013914 N 0.833
Q9YHU4_FUGRU Takifugu rubripes ENSTRUG00000010538 N 0.833
PTSG_08923 Salpingoeca rosetta PTSG_08923 N 0.823
ENSGGOG00000000469 Gorilla gorilla ENSGGOG00000000469 N 0.816
Sjc_0045900 Schistosoma japonicum Sjc_0045900 N 0.802
XP_002167624.1 Hydra magnipapillata XP_002167624.1 N 0.796
ISCW019664 Ixodes scapularis ISCW019664 N 0.759
CAOG_00458 Capsaspora owczarzaki CAOG_00458 N 0.757
Bm1_55710 Brugia malayi Bm1_55710 N 0.750
LOAG_00486 Loa loa LOAG_00486 N 0.750
WUBG_02195 Wuchereria bancrofti WUBG_02195 N 0.750
DGIL_AUG5s4512g5t1 Acyrtosiphon pisum DGIL_AUG5s4512g5t1 N 0.748
SPPG_02695 Spizellomyces punctatus SPPG_02695 N 0.739
CBN00865 Caenorhabditis brenneri CBN00865 N 0.735
CRE28738 Caenorhabditis remanei CRE28738 N 0.735
CBG00419 Caenorhabditis briggsae CBG00419 N 0.735
uaf-2 Caenorhabditis elegans Y116A8C.35 N 0.735
Minc02944 Meloidogyne incognita Minc02944 N 0.722
Aqu1.226671 Amphimedon queenslandica Aqu1.226671 N 0.714
RO3G_03843 Rhizopus oryzae RO3G_03843 N 0.706
estExt_Genewise1Plus.C_31771 Mucor circinelloides estExt_Genewise1Plus.C_31771 N 0.706