CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM27
(
Callithrix jacchus
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSCJAG00000021308
T00470_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000039668
CCCH ZF
274
300
PPKRRCRDYDERGFCVLGDLCQFDHGN
ENSCJAP00000039668
RRM
578
643
EVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLSNEEARKAISSTEAVLNNRFIR
ENSCJAP00000039669
CCCH ZF
274
300
PPKRRCRDYDERGFCVLGDLCQFDHGN
ENSCJAP00000039669
RRM
605
670
EVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLSNEEARKAISSTEAVLNNRFIR
Links
Other
CCCH ZF,RRM
family RBPs
Other
Callithrix jacchus
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM27
Tupaia belangeri
ENSTBEG00000004337
N
0.989
RBM27
Tursiops truncatus
ENSTTRG00000016713
N
0.989
Rbm27
Mus musculus
ENSMUSG00000024491
N
0.989
RBM27
Ochotona princeps
ENSOPRG00000005424
N
0.989
ENSPPYG00000015909
Pongo pygmaeus
ENSPPYG00000015909
N
0.989
D3ZE52_RAT
Rattus norvegicus
ENSRNOG00000027250
N
0.989
RBM27
Pteropus vampyrus
ENSPVAG00000005218
N
0.989
RBM27
Pan troglodytes
ENSPTRG00000017373
N
0.989
Ame_R013204
Ailuropoda melanoleuca
Ame_R013204
N
0.989
RBM27
Macaca mulatta
ENSMMUG00000004476
N
0.989
RBM27
Equus caballus
ENSECAG00000000883
N
0.989
RBM27
Canis familiaris
ENSCAFG00000006456
N
0.989
RBM27
Dasypus novemcinctus
ENSDNOG00000019753
N
0.989
RBM27
Cavia porcellus
ENSCPOG00000002498
N
0.989
RBM27
Homo sapiens
ENSG00000091009
N
0.989
RBM27
Bos taurus
ENSBTAG00000011642
N
0.989
RBM27
Microcebus murinus
ENSMICG00000003262
N
0.989
RBM27
Loxodonta africana
ENSLAFG00000022447
N
0.989
RBM27
Gorilla gorilla
ENSGGOG00000013312
N
0.989
RBM27
Sorex araneus
ENSSARG00000000313
N
0.989
RBM27
Oryctolagus cuniculus
ENSOCUG00000000186
N
0.978
RBM27
Monodelphis domestica
ENSMODG00000010182
N
0.957
RBM27
Ornithorhynchus anatinus
ENSOANG00000012563
N
0.946
rbm27
Xenopus tropicalis
ENSXETG00000002322
N
0.904
RBM27
Taeniopygia guttata
ENSTGUG00000000085
N
0.894
ENSTRUG00000004518
Takifugu rubripes
ENSTRUG00000004518
N
0.839
ENSGACG00000020719
Gasterosteus aculeatus
ENSGACG00000020719
N
0.830
Rbm26
Dipodomys ordii
ENSDORG00000006232
N
0.710
RBM26
Ochotona princeps
ENSOPRG00000001124
N
0.710