THAPSDRAFT_270037 (Thalassiosira pseudonana)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		Thaps270037 T00773_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Thaps270037 CCCH ZF 13 39
Thaps270037 RRM 88 146
Thaps270037 CCCH ZF 155 180

Links

Other CCCH ZF,RRM family RBPs
Other Thalassiosira pseudonana RBPs

6 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.3.679.1 Fragilariopsis cylindrus gw1.3.679.1 N 0.795
PHATRDRAFT_29958 Phaeodactylum tricornutum Phatr29958 N 0.750
gwEuk.2.46.1 Phytophthora ramorum gwEuk.2.46.1 N 0.723
s_458600 Phytophthora sojae s_458600 N 0.714
estExt_fgenesh1_kg.C_153200001 Phytophthora capsici estExt_fgenesh1_kg.C_153200001 N 0.714
PITG_05688 Phytophthora infestans PITG_05688 N 0.705