CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CpipJ_CPIJ006186
(
Culex pipiens
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CpipJ_CPIJ006186
T01332_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CpipJ_CPIJ006186-RA
CCCH ZF
383
409
ESYSLCENFVDNQTCHYGNQCVEAHGI
Links
Other
CCCH ZF
family RBPs
Other
Culex pipiens
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ006186
Culex quinquefasciatus
CPIJ006186
N
1.000
AGAP011545
Anopheles gambiae
AGAP011545
N
0.778
AAEL008579
Aedes aegypti
AAEL008579
N
0.778
GL26040
Drosophila persimilis
FBgn0163622
N
0.704
GA21777-RA
Drosophila pseudoobscura
FBgn0081762
N
0.704
GI13941
Drosophila mojavensis
FBgn0136695
N
0.704