CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZC3H8
(
Oryctolagus cuniculus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSOCUG00000011253
T03053_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000009687
CCCH ZF
207
232
KGKQICKYFLERKCIKGDQCKFDHDA
ENSOCUP00000009687
CCCH ZF
236
261
KKKKMCKFYVQGYCTRGENCLYLHNE
ENSOCUP00000009687
CCCH ZF
263
285
PCKFYHTGTKCYQGEYCKFSHAP
Links
Other
CCCH ZF
family RBPs
Other
Oryctolagus cuniculus
RBPs
57 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000012165
Pongo pygmaeus
ENSPPYG00000012165
N
0.987
ZC3H8
Pan troglodytes
ENSPTRG00000012362
N
0.987
A6MKC0_CALJA
Callithrix jacchus
ENSCJAG00000016492
N
0.987
ZC3H8
Dasypus novemcinctus
ENSDNOG00000018056
N
0.987
ZC3H8
Gorilla gorilla
ENSGGOG00000009004
N
0.987
ZC3H8
Homo sapiens
ENSG00000144161
N
0.987
ZC3H8
Choloepus hoffmanni
ENSCHOG00000010391
N
0.987
ZC3H8
Canis familiaris
ENSCAFG00000007155
N
0.973
ZC3H8
Vicugna pacos
ENSVPAG00000005911
N
0.960
ZC3H8
Sus scrofa
ENSSSCG00000008099
N
0.960
ZC3H8
Loxodonta africana
ENSLAFG00000004675
N
0.947
Q17QY2_BOVIN
Bos taurus
ENSBTAG00000015965
N
0.947
ZC3H8
Ochotona princeps
ENSOPRG00000011183
N
0.947
ENSCPOG00000008258
Cavia porcellus
ENSCPOG00000008258
N
0.920
Ame_R012777
Ailuropoda melanoleuca
Ame_R012777
N
0.920
Zc3h8
Rattus norvegicus
ENSRNOG00000017647
N
0.907
ZC3H8
Procavia capensis
ENSPCAG00000015426
N
0.907
ZC3H8
Echinops telfairi
ENSETEG00000016560
N
0.893
Zc3h8
Mus musculus
ENSMUSG00000027387
N
0.893
ZC3H8
Sorex araneus
ENSSARG00000012883
N
0.893
ZC3H8
Erinaceus europaeus
ENSEEUG00000006984
N
0.880
ZC3H8
Microcebus murinus
ENSMICG00000013555
N
0.880
ENSCPOG00000023849
Cavia porcellus
ENSCPOG00000023849
N
0.880
ZC3H6
Meleagris gallopavo
ENSMGAG00000003025
N
0.821
ZC3H6
Gallus gallus
ENSGALG00000008269
N
0.821
ZC3H6
Ornithorhynchus anatinus
ENSOANG00000012054
N
0.821
ZC3H8
Taeniopygia guttata
ENSTGUG00000007468
N
0.800
zc3h6
Xenopus tropicalis
ENSXETG00000013762
N
0.795
ZC3H6
Loxodonta africana
ENSLAFG00000001151
N
0.782
ZC3H6
Gorilla gorilla
ENSGGOG00000001665
N
0.769
ZC3H6
Homo sapiens
ENSG00000188177
N
0.769
ZC3H6
Ochotona princeps
ENSOPRG00000012717
N
0.769
ZC3H6
Pan troglodytes
ENSPTRG00000012363
N
0.769
ZC3H6
Tursiops truncatus
ENSTTRG00000013154
N
0.769
ZC3H6
Pteropus vampyrus
ENSPVAG00000013728
N
0.769
ZC3H6
Tarsius syrichta
ENSTSYG00000006672
N
0.769
ZC3H6
Sus scrofa
ENSSSCG00000008096
N
0.769
ZC3H6
Oryctolagus cuniculus
ENSOCUG00000011125
N
0.769
ZC3H6
Bos taurus
ENSBTAG00000020646
N
0.769
ZC3H6
Vicugna pacos
ENSVPAG00000005912
N
0.769
ZC3H6
Callithrix jacchus
ENSCJAG00000016479
N
0.769
ZC3H6
Canis familiaris
ENSCAFG00000007160
N
0.769
ZC3H6
Sorex araneus
ENSSARG00000001035
N
0.763
ZC3H6
Anolis carolinensis
ENSACAG00000005815
N
0.763
Zc3h6
Dipodomys ordii
ENSDORG00000013967
N
0.756
Ame_R012775
Ailuropoda melanoleuca
Ame_R012775
N
0.756
ZC3H6
Dasypus novemcinctus
ENSDNOG00000000253
N
0.753
ZC3H6
Macaca mulatta
ENSMMUG00000016430
N
0.737
ZC3H6
Tupaia belangeri
ENSTBEG00000016232
N
0.737
ZC3H6
Otolemur garnettii
ENSOGAG00000002556
N
0.737
ZC3H6
Spermophilus tridecemlineatus
ENSSTOG00000008120
N
0.737
Zc3h6
Mus musculus
ENSMUSG00000042851
N
0.727
ZC3H6
Myotis lucifugus
ENSMLUG00000004896
N
0.724
ZC3H6
Monodelphis domestica
ENSMODG00000006612
N
0.720
ZC3H6
Procavia capensis
ENSPCAG00000015468
N
0.718
CABZ01077452.1
Danio rerio
ENSDARG00000075165
N
0.714
Zc3h6
Rattus norvegicus
ENSRNOG00000026277
N
0.711