NP_001072101.1 (Takifugu rubripes)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTRUG00000003156 T03519_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000007391 CCCH ZF 3 28
ENSTRUP00000007391 CCCH ZF 34 57
ENSTRUP00000007391 CCCH ZF 172 195
ENSTRUP00000007391 CCCH ZF 327 353
ENSTRUP00000007392 CCCH ZF 3 28
ENSTRUP00000007392 CCCH ZF 34 57
ENSTRUP00000007392 CCCH ZF 158 181
ENSTRUP00000007392 CCCH ZF 313 339
ENSTRUP00000007393 CCCH ZF 3 28
ENSTRUP00000007393 CCCH ZF 34 57
ENSTRUP00000007393 CCCH ZF 135 158
ENSTRUP00000007393 CCCH ZF 290 316
ENSTRUP00000007394 CCCH ZF 1 21
ENSTRUP00000007394 CCCH ZF 42 65
ENSTRUP00000007394 CCCH ZF 197 223

Links

Other CCCH ZF family RBPs
Other Takifugu rubripes RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MKRN2 Tetraodon nigroviridis ENSTNIG00000004883 N 0.871
MKRN2 Gasterosteus aculeatus ENSGACG00000003396 N 0.861
MKRN2 Oryzias latipes ENSORLG00000009824 N 0.786
mkrn2 Danio rerio ENSDARG00000007630 N 0.745
Mkrn2 Mus musculus ENSMUSG00000000439 N 0.735
MKRN2 Anolis carolinensis ENSACAG00000013310 N 0.728
ABR68861 Xenopus laevis ABR68861 N 0.725
Mkrn2 Rattus norvegicus ENSRNOG00000009176 N 0.725
B0F0H3 Xenopus laevis B0F0H3 N 0.725
AAI06425 Xenopus laevis AAI06425 N 0.725
MKRN2 Choloepus hoffmanni ENSCHOG00000005438 N 0.718
MKRN2 Procavia capensis ENSPCAG00000016175 N 0.718
MKRN2 Ochotona princeps ENSOPRG00000003501 N 0.716
MKRN2 Taeniopygia guttata ENSTGUG00000004017 N 0.709
MKRN2 Oryctolagus cuniculus ENSOCUG00000014171 N 0.709
MKRN2 Canis familiaris ENSCAFG00000004967 N 0.709
Q2YDI8_BOVIN Bos taurus ENSBTAG00000004512 N 0.709