CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MKRN2
(
Anolis carolinensis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSACAG00000013310
T02236_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000013096
CCCH ZF
2
27
TKDVTCRYFMQGVCREGNRCLFSHDL
ENSACAP00000013096
CCCH ZF
33
56
STICKFYQKGQCAYGTRCRYDHVR
ENSACAP00000013096
CCCH ZF
169
194
DGEQLCPYAAAGMCQFGDRCIYLHGQ
ENSACAP00000013096
CCCH ZF
326
352
GRKACKYFEQGKGTCPFGGKCLYLHAY
Links
Other
CCCH ZF
family RBPs
Other
Anolis carolinensis
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Q8UWH3_CHICK
Gallus gallus
ENSGALG00000004991
N
0.827
MKRN2
Procavia capensis
ENSPCAG00000016175
N
0.825
MKRN2
Canis familiaris
ENSCAFG00000004967
N
0.825
MKRN2
Choloepus hoffmanni
ENSCHOG00000005438
N
0.825
MKRN2
Vicugna pacos
ENSVPAG00000011064
N
0.816
MKRN2
Oryctolagus cuniculus
ENSOCUG00000014171
N
0.806
MKRN2
Gorilla gorilla
ENSGGOG00000000429
N
0.806
MKRN2
Pan troglodytes
ENSPTRG00000014634
N
0.806
ENSPPYG00000013387
Pongo pygmaeus
ENSPPYG00000013387
N
0.806
MKRN2
Ochotona princeps
ENSOPRG00000003501
N
0.806
MKRN2
Macaca mulatta
ENSMMUG00000009536
N
0.806
MKRN2
Homo sapiens
ENSG00000075975
N
0.806
MKRN2
Taeniopygia guttata
ENSTGUG00000004017
N
0.798
Mkrn2
Rattus norvegicus
ENSRNOG00000009176
N
0.796
Mkrn2
Mus musculus
ENSMUSG00000000439
N
0.796
Q2YDI8_BOVIN
Bos taurus
ENSBTAG00000004512
N
0.796
MKRN2
Cavia porcellus
ENSCPOG00000001208
N
0.777
MKRN2
Loxodonta africana
ENSLAFG00000011601
N
0.777
MKRN2
Myotis lucifugus
ENSMLUG00000017643
N
0.777
Mkrn2
Dipodomys ordii
ENSDORG00000015621
N
0.769
MKRN2
Felis catus
ENSFCAG00000007979
N
0.767
MKRN2
Callithrix jacchus
ENSCJAG00000016733
N
0.767
MKRN2
Tarsius syrichta
ENSTSYG00000007429
N
0.748
Ame_R009492
Ailuropoda melanoleuca
Ame_R009492
N
0.738
B0F0H3
Xenopus laevis
B0F0H3
N
0.731
ABR68861
Xenopus laevis
ABR68861
N
0.731
AAI06425
Xenopus laevis
AAI06425
N
0.731
mkrn2
Danio rerio
ENSDARG00000007630
N
0.728
LOC100057038
Equus caballus
ENSECAG00000024404
N
0.728
MKRN2
Gasterosteus aculeatus
ENSGACG00000003396
N
0.728
NP_001072101.1
Takifugu rubripes
ENSTRUG00000003156
N
0.728
MKRN2
Oryzias latipes
ENSORLG00000009824
N
0.702