CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GG17630
(
Drosophila erecta
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
FBgn0109852
T03713_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0136176
CCCH ZF
409
432
PKPVCRFYTRGQCTWGMSCRFLHP
Links
Other
CCCH ZF
family RBPs
Other
Drosophila erecta
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GH24700
Drosophila grimshawi
FBgn0132155
N
1.000
CG1677
Drosophila melanogaster
FBgn0029941
N
1.000
AAEL000198
Aedes aegypti
AAEL000198
N
1.000
AGAP010800
Anopheles gambiae
AGAP010800
N
1.000
GD16158
Drosophila simulans
FBgn0085967
N
1.000
GE17532
Drosophila yakuba
FBgn0234991
N
1.000
GF20935
Drosophila ananassae
FBgn0097940
N
1.000
GM17474
Drosophila sechellia
FBgn0172384
N
1.000
GK16215
Drosophila willistoni
FBgn0218217
N
1.000
GJ14740
Drosophila virilis
FBgn0201944
N
1.000
GI14667
Drosophila mojavensis
FBgn0137418
N
1.000
GL14632
Drosophila persimilis
FBgn0152236
N
0.958
CPIJ000710
Culex quinquefasciatus
CPIJ000710
N
0.958
GA28570-RA
Drosophila pseudoobscura
FBgn0249930
N
0.958
CpipJ_CPIJ000710
Culex pipiens
CpipJ_CPIJ000710
N
0.958
amel4_ncbi_hmm13965
Apis mellifera
amel4_ncbi_hmm13965
N
0.840
nasonia_NCBI_hmm667174
Nasonia vitripennis
nasonia_NCBI_hmm667174
N
0.840
DGIL_AUG5s7004g11t1
Acyrtosiphon pisum
DGIL_AUG5s7004g11t1
N
0.800
BGIBMGA011662
Bombyx mori
BGIBMGA011662
N
0.760
XP_001200916.1
Strongylocentrotus purpuratus
XP_001200916.1
N
0.708
XP_001193057.1
Strongylocentrotus purpuratus
XP_001193057.1
N
0.708
Zc3h18
Mus musculus
ENSMUSG00000017478
N
0.708