POPTR_0019s08040 (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0019s08040 T04075_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0019s08040.1 CCCH ZF 54 80
POPTR_0019s08040.2 CCCH ZF 21 47

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

5 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00019118001 Vitis vinifera GSVIVG00019118001 N 0.963
LjSGA_052738.1 Lotus japonicus LjSGA_052738.1 N 0.963
GRMZM2G006493 Zea mays GRMZM2G006493 N 0.704
cassava25492.m1 Manihot esculenta cassava25492.m1 N 0.704