GRMZM2G006493 (Zea mays)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 GRMZM2G006493 T05692_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G006493_P01 CCCH ZF 107 133
GRMZM2G006493_P01 CCCH ZF 234 259
GRMZM2G006493_P01 CCCH ZF 281 307
GRMZM2G006493_P01 CCCH ZF 428 454
GRMZM2G006493_P01 CCCH ZF 474 500
GRMZM2G006493_P02 CCCH ZF 107 133
GRMZM2G006493_P02 CCCH ZF 254 279
GRMZM2G006493_P02 CCCH ZF 301 327
GRMZM2G006493_P02 CCCH ZF 448 474
GRMZM2G006493_P02 CCCH ZF 494 520
GRMZM2G006493_P03 CCCH ZF 107 133
GRMZM2G006493_P03 CCCH ZF 237 262
GRMZM2G006493_P03 CCCH ZF 284 310
GRMZM2G006493_P03 CCCH ZF 431 457
GRMZM2G006493_P03 CCCH ZF 477 503
GRMZM2G006493_P04 CCCH ZF 107 133
GRMZM2G006493_P05 CCCH ZF 1 18
GRMZM2G006493_P05 CCCH ZF 139 165
GRMZM2G006493_P06 CCCH ZF 1 18
GRMZM2G006493_P06 CCCH ZF 139 165
GRMZM2G006493_P06 CCCH ZF 185 211

Links

Other CCCH ZF family RBPs
Other Zea mays RBPs

8 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB08G012360 Sorghum bicolor Sb08g012360 N 0.955
LOC_Os12g18120 Oryza sativa LOC_Os12g18120 N 0.896
BGIOSIBCE036236 Oryza indica BGIOSIBCE036236 N 0.896
BRADI4G39137 Brachypodium distachyon BRADI4G39137 N 0.822
LjSGA_052738.1 Lotus japonicus LjSGA_052738.1 N 0.704
POPTR_0019s08040 Populus trichocarpa POPTR_0019s08040 N 0.704
GSVIVG00019118001 Vitis vinifera GSVIVG00019118001 N 0.704