Sb03g027910 (Sorghum bicolor)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Sb03g027910 T04109_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb03g027910.1 CCCH ZF 108 134
Sb03g027910.1 CCCH ZF 158 183
Sb03g027910.1 CCCH ZF 209 235
Sb03g027910.1 CCCH ZF 290 316
Sb03g027910.1 CCCH ZF 370 396
Sb03g027910.1 CCCH ZF 422 447
Sb03g027910.2 CCCH ZF 21 46
Sb03g027910.2 CCCH ZF 72 98
Sb03g027910.2 CCCH ZF 153 179
Sb03g027910.2 CCCH ZF 233 259
Sb03g027910.2 CCCH ZF 285 310

Links

Other CCCH ZF family RBPs
Other Sorghum bicolor RBPs

10 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G422205 Zea mays GRMZM2G422205 N 0.872
LOC_Os01g42970 Oryza sativa LOC_Os01g42970 N 0.770
BRADI2G43600 Brachypodium distachyon BRADI2G43600 N 0.746
BGIOSIBCE002767 Oryza indica BGIOSIBCE002767 N 0.733
Glyma08g25050.1 Glycine max Glyma08g25050.1 N 0.722
29593.m000174 Ricinus communis 29593.m000174 N 0.720
cassava29489.valid.m1 Manihot esculenta cassava29489.valid.m1 N 0.714
cassava29490.valid.m1 Manihot esculenta cassava29490.valid.m1 N 0.714
GSVIVG00036686001 Vitis vinifera GSVIVG00036686001 N 0.710
B9HYE1_POPTR Populus trichocarpa POPTR_0010s18390 N 0.708