GSVIVG00036686001 (Vitis vinifera)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 GSVIVG00036686001 T03909_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00036686001 CCCH ZF 163 189
GSVIVT00036686001 CCCH ZF 215 241
GSVIVT00036686001 CCCH ZF 262 288
GSVIVT00036686001 CCCH ZF 339 365
GSVIVT00036686001 CCCH ZF 422 448
GSVIVT00036686001 CCCH ZF 473 499

Links

Other CCCH ZF family RBPs
Other Vitis vinifera RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma08g25050.1 Glycine max Glyma08g25050.1 N 0.889
cassava29489.valid.m1 Manihot esculenta cassava29489.valid.m1 N 0.889
cassava29490.valid.m1 Manihot esculenta cassava29490.valid.m1 N 0.889
B9HYE1_POPTR Populus trichocarpa POPTR_0010s18390 N 0.870
ppa004704m Prunus persica ppa004704m N 0.864
29593.m000174 Ricinus communis 29593.m000174 N 0.864
chr3.CM0106.60.nd Lotus japonicus chr3.CM0106.60.nd N 0.846
PK22271.1 Cannabis sativa PK22271.1 N 0.840
MDP0000147415 Malus x domestica MDP0000147415 N 0.833
XM_002884872.1 Arabidopsis lyrata fgenesh2_kg.3__1328__AT3G12680.1 N 0.821
HUA1 Arabidopsis thaliana AT3G12680-TAIR-G N 0.815
mgf000365m Mimulus guttatus mgf000365m N 0.790
mgf016176m Mimulus guttatus mgf016176m N 0.790
LOC_Os01g42970 Oryza sativa LOC_Os01g42970 N 0.765
BGIOSIBCE002767 Oryza indica BGIOSIBCE002767 N 0.741
Sb03g027910 Sorghum bicolor Sb03g027910 N 0.710