B9HYE1_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0010s18390 T04057_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s18390.1 CCCH ZF 170 196
POPTR_0010s18390.1 CCCH ZF 222 248
POPTR_0010s18390.1 CCCH ZF 268 294
POPTR_0010s18390.1 CCCH ZF 346 372
POPTR_0010s18390.1 CCCH ZF 428 454
POPTR_0010s18390.1 CCCH ZF 482 506

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava29489.valid.m1 Manihot esculenta cassava29489.valid.m1 N 0.938
cassava29490.valid.m1 Manihot esculenta cassava29490.valid.m1 N 0.938
29593.m000174 Ricinus communis 29593.m000174 N 0.912
Glyma08g25050.1 Glycine max Glyma08g25050.1 N 0.877
GSVIVG00036686001 Vitis vinifera GSVIVG00036686001 N 0.870
HUA1 Arabidopsis thaliana AT3G12680-TAIR-G N 0.863
XM_002884872.1 Arabidopsis lyrata fgenesh2_kg.3__1328__AT3G12680.1 N 0.863
ppa004704m Prunus persica ppa004704m N 0.840
chr3.CM0106.60.nd Lotus japonicus chr3.CM0106.60.nd N 0.840
MDP0000147415 Malus x domestica MDP0000147415 N 0.814
mgf000365m Mimulus guttatus mgf000365m N 0.812
mgf016176m Mimulus guttatus mgf016176m N 0.812
PK22271.1 Cannabis sativa PK22271.1 N 0.809
LOC_Os01g42970 Oryza sativa LOC_Os01g42970 N 0.752
BGIOSIBCE002767 Oryza indica BGIOSIBCE002767 N 0.720
Sb03g027910 Sorghum bicolor Sb03g027910 N 0.708