CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PBANKA_060860
(
Plasmodium berghei
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
PBANKA_060860
T04400_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PBANKA_060860
CCCH ZF
25
51
FKTKMCPFQKNKNYCLNESDCHYAHSI
PBANKA_060860
CCCH ZF
62
86
NTKLCDYIKKKMPCKDVNCKFAHDT
PBANKA_060860
CCCH ZF
98
123
YKSTICSFWGKGKCFNGNKCRFAHGT
Links
Other
CCCH ZF
family RBPs
Other
Plasmodium berghei
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PY03482
Plasmodium yoelii
PY03482
N
1.000
PCHAS_061040
Plasmodium chabaudi
PCHAS_061040
N
0.974
PVX_084540
Plasmodium vivax
PVX_084540
N
0.911
PKH_130920
Plasmodium knowlesi
PKH_130920
N
0.911
PFL0510c
Plasmodium falciparum
PFL0510c
N
0.873