CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PKH_130920
(
Plasmodium knowlesi
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
PKH_130920
T04441_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PKH_130920
CCCH ZF
25
51
FKTKMCPFQKNKNYCLNESNCHYAHSI
PKH_130920
CCCH ZF
61
86
RNTKLCDYVKKKIPCRDANCKFAHDI
PKH_130920
CCCH ZF
98
123
YKSTICSFWGKGKCFNGNKCRFAHGT
Links
Other
CCCH ZF
family RBPs
Other
Plasmodium knowlesi
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PVX_084540
Plasmodium vivax
PVX_084540
N
0.987
PFL0510c
Plasmodium falciparum
PFL0510c
N
0.937
PCHAS_061040
Plasmodium chabaudi
PCHAS_061040
N
0.911
PBANKA_060860
Plasmodium berghei
PBANKA_060860
N
0.911
PY03482
Plasmodium yoelii
PY03482
N
0.911