LOC_Os01g68860 (Oryza sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 LOC_Os01g68860 T03938_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g68860.1 CCCH ZF 81 107
LOC_Os01g68860.1 CCCH ZF 126 152
LOC_Os01g68860.1 CCCH ZF 172 198
LOC_Os01g68860.1 CCCH ZF 333 359
LOC_Os01g68860.1 CCCH ZF 379 405
LOC_Os01g68860.2 CCCH ZF 9 35
LOC_Os01g68860.2 CCCH ZF 55 81
LOC_Os01g68860.2 CCCH ZF 216 242
LOC_Os01g68860.2 CCCH ZF 262 288
LOC_Os01g68860.3 CCCH ZF 131 157
LOC_Os01g68860.3 CCCH ZF 177 203

Links

Other CCCH ZF family RBPs
Other Oryza sativa RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.963
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.956
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.954
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.919
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.911
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.852
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.844
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.844
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.837
SB05G013190 Sorghum bicolor Sb05g013190 N 0.830
ppa005813m Prunus persica ppa005813m N 0.830
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.830
PK23881.1 Cannabis sativa PK23881.1 N 0.822
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.822
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.822
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.822
30128.m009030 Ricinus communis 30128.m009030 N 0.822
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.822
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.822
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.822
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.822
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.815
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.807
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.807
MDP0000118897 Malus x domestica MDP0000118897 N 0.796
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.793
GSVIVG00019119001 Vitis vinifera GSVIVG00019119001 N 0.787
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.785
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.785
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.785
mgf007299m Mimulus guttatus mgf007299m N 0.785
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.778
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.770
BGIOSIBCE034418 Oryza indica BGIOSIBCE034418 N 0.750
MDP0000178517 Malus x domestica MDP0000178517 N 0.733
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.733
gw1.6.198.1 Physcomitrella patens gw1.6.198.1 N 0.722
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.719
cassava23590.valid.m1 Manihot esculenta cassava23590.valid.m1 N 0.704