estExt_fgenesh1_pg.C_430142 (Physcomitrella patens)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 estExt_fgenesh1_pg.C_430142 T05010_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_430142 CCCH ZF 158 183
estExt_fgenesh1_pg.C_430142 CCCH ZF 231 256
estExt_fgenesh1_pg.C_430142 CCCH ZF 320 346

Links

Other CCCH ZF family RBPs
Other Physcomitrella patens RBPs

12 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.11.272.1 Selaginella moellendorfii gw1.11.272.1 N 0.785
mgf004101m Mimulus guttatus mgf004101m N 0.725
mgf003951m Mimulus guttatus mgf003951m N 0.725
BRADI3G16360 Brachypodium distachyon BRADI3G16360 N 0.713
mgf012162m Mimulus guttatus mgf012162m N 0.713
BRADI3G16377 Brachypodium distachyon BRADI3G16377 N 0.713
XM_002890939.1 Arabidopsis lyrata scaffold_103602.1 N 0.700
cassava5467.m1 Manihot esculenta cassava5467.m1 N 0.700
B9MU37_POPTR Populus trichocarpa POPTR_0001s02330 N 0.700
BGIOSIBCE026569 Oryza indica BGIOSIBCE026569 N 0.700
AT1G32360 Arabidopsis thaliana AT1G32360-TAIR-G N 0.700
LOC_Os08g06330 Oryza sativa LOC_Os08g06330 N 0.700