CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G024655
(
Zea mays
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
GRMZM2G024655
T05697_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G024655_P01
CCCH ZF
63
87
KGICHHFVRTGACKYGDSCRYFHPK
Links
Other
CCCH ZF
family RBPs
Other
Zea mays
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB03G009590
Sorghum bicolor
Sb03g009590
N
0.960
BRADI2G08905
Brachypodium distachyon
BRADI2G08905
N
0.808
PDK_20s1487951g001
Phoenix dactylifera
PDK_20s1487951g001
N
0.800
LOC_Os01g14870
Oryza sativa
LOC_Os01g14870
N
0.760
BGIOSIBCE001150
Oryza indica
BGIOSIBCE001150
N
0.760
GSVIVG00031300001
Vitis vinifera
GSVIVG00031300001
N
0.704