CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R001967
(
Ailuropoda melanoleuca
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Ame_R001967
T05942_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R001967
CCCH ZF
106
130
KVHICQYFLQGECKFGTSCKRSHDI
Links
Other
CCCH ZF
family RBPs
Other
Ailuropoda melanoleuca
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PARP12
Canis familiaris
ENSCAFG00000003997
N
0.920
PARP12
Microcebus murinus
ENSMICG00000003163
N
0.920
PARP12
Tarsius syrichta
ENSTSYG00000004008
N
0.880
D4A3V3_RAT
Rattus norvegicus
ENSRNOG00000008196
N
0.880
Parp12
Mus musculus
ENSMUSG00000038507
N
0.880
PARP12
Spermophilus tridecemlineatus
ENSSTOG00000004578
N
0.840
PARP12
Echinops telfairi
ENSETEG00000013423
N
0.840
PARP12
Cavia porcellus
ENSCPOG00000011210
N
0.840
PARP12
Tursiops truncatus
ENSTTRG00000015180
N
0.840
PARP12
Erinaceus europaeus
ENSEEUG00000002654
N
0.800
PARP12
Dasypus novemcinctus
ENSDNOG00000009685
N
0.760
PARP12
Taeniopygia guttata
ENSTGUG00000011354
N
0.720
PARP12
Oryctolagus cuniculus
ENSOCUG00000003213
N
0.720
ENSMGAG00000013110
Meleagris gallopavo
ENSMGAG00000013110
N
0.720
PARP12
Macropus eugenii
ENSMEUG00000008233
N
0.720