CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOAG_00808
(
Loa loa
)
CCHC ZF,KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00013 (KH_1)
IPR001878
IPR018111
LOAG_00808
T06943_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOAG_00808T0
KH
335
418
DKVWIPQENHPEINFVGLLIGPRGNTLKALEAETGAKIIIRGKGSVKEGKLGRREGPMPGENEPLHAYVTGTDYTVIKKACEKI
LOAG_00808T0
CCHC ZF
484
501
IICTACGGAGHIAKDCKN
Links
Other
CCHC ZF,KH
family RBPs
Other
Loa loa
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
WUBG_05719
Wuchereria bancrofti
WUBG_05719
N
0.980
Minc06531
Meloidogyne incognita
Minc06531
N
0.863
Minc19096
Meloidogyne incognita
Minc19096
N
0.822
estExt_fgenesh1_pg.C_1320011
Capitella teleta
estExt_fgenesh1_pg.C_1320011
N
0.757
BGIBMGA013450
Bombyx mori
BGIBMGA013450
N
0.748
SF1
Drosophila melanogaster
FBgn0025571
N
0.702
GA19167-RA
Drosophila pseudoobscura
FBgn0079164
N
0.702