CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CpipJ_CPIJ007409
(
Culex pipiens
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CpipJ_CPIJ007409
T07960_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CpipJ_CPIJ007409-RA
CCHC ZF
661
678
LTCFQCGGVGHMARQCKV
Links
Other
CCHC ZF
family RBPs
Other
Culex pipiens
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ007409
Culex quinquefasciatus
CPIJ007409
N
1.000
AAEL010904
Aedes aegypti
AAEL010904
N
0.944
RecQ4
Drosophila melanogaster
FBgn0040290
N
0.889
AGAP005917
Anopheles gambiae
AGAP005917
N
0.833
GA20388-RA
Drosophila pseudoobscura
FBgn0080383
N
0.833
CRE19609
Caenorhabditis remanei
CRE19609
N
0.722
CJA26146
Caenorhabditis japonica
CJA26146
N
0.722
CRE30341
Caenorhabditis remanei
CRE30341
N
0.722