CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA26146
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA26146
T09785_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA26146
CCHC ZF
301
318
LKCFRCGGVGHMSRQCTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
60 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA02670
Caenorhabditis japonica
CJA02670
N
0.944
CJA27243
Caenorhabditis japonica
CJA27243
N
0.889
CJA23650
Caenorhabditis japonica
CJA23650
N
0.889
CJA15447
Caenorhabditis japonica
CJA15447
N
0.889
CJA10177
Caenorhabditis japonica
CJA10177
N
0.889
CJA11030
Caenorhabditis japonica
CJA11030
N
0.889
CJA29053
Caenorhabditis japonica
CJA29053
N
0.889
CJA05078
Caenorhabditis japonica
CJA05078
N
0.889
CJA13676
Caenorhabditis japonica
CJA13676
N
0.833
CJA07934
Caenorhabditis japonica
CJA07934
N
0.833
CJA13217
Caenorhabditis japonica
CJA13217
N
0.833
CJA13138
Caenorhabditis japonica
CJA13138
N
0.833
CJA04336
Caenorhabditis japonica
CJA04336
N
0.833
CJA10427
Caenorhabditis japonica
CJA10427
N
0.833
CRE30341
Caenorhabditis remanei
CRE30341
N
0.833
CRE29150
Caenorhabditis remanei
CRE29150
N
0.833
CRE03331
Caenorhabditis remanei
CRE03331
N
0.833
CJA28132
Caenorhabditis japonica
CJA28132
N
0.833
CJA18092
Caenorhabditis japonica
CJA18092
N
0.833
CRE09308
Caenorhabditis remanei
CRE09308
N
0.833
CRE06628
Caenorhabditis remanei
CRE06628
N
0.833
CJA21290
Caenorhabditis japonica
CJA21290
N
0.833
CRE19609
Caenorhabditis remanei
CRE19609
N
0.833
CRE13684
Caenorhabditis remanei
CRE13684
N
0.833
CJA21786
Caenorhabditis japonica
CJA21786
N
0.778
CJA18651
Caenorhabditis japonica
CJA18651
N
0.778
CJA22105
Caenorhabditis japonica
CJA22105
N
0.778
CJA21076
Caenorhabditis japonica
CJA21076
N
0.778
CJA13245
Caenorhabditis japonica
CJA13245
N
0.778
CJA12763
Caenorhabditis japonica
CJA12763
N
0.778
CJA17448
Caenorhabditis japonica
CJA17448
N
0.778
CJA19647
Caenorhabditis japonica
CJA19647
N
0.778
CJA23880
Caenorhabditis japonica
CJA23880
N
0.778
CJA23793
Caenorhabditis japonica
CJA23793
N
0.778
CJA24356
Caenorhabditis japonica
CJA24356
N
0.778
CJA24410
Caenorhabditis japonica
CJA24410
N
0.778
CJA27741
Caenorhabditis japonica
CJA27741
N
0.778
CJA25140
Caenorhabditis japonica
CJA25140
N
0.778
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.778
CJA00142
Caenorhabditis japonica
CJA00142
N
0.778
CJA03777
Caenorhabditis japonica
CJA03777
N
0.778
CJA05814
Caenorhabditis japonica
CJA05814
N
0.778
CJA23492
Caenorhabditis japonica
CJA23492
N
0.778
CJA02546
Caenorhabditis japonica
CJA02546
N
0.778
CJA00525
Caenorhabditis japonica
CJA00525
N
0.778
CJA00848
Caenorhabditis japonica
CJA00848
N
0.778
CJA23027
Caenorhabditis japonica
CJA23027
N
0.778
CJA05850
Caenorhabditis japonica
CJA05850
N
0.722
CRE11513
Caenorhabditis remanei
CRE11513
N
0.722
CpipJ_CPIJ007409
Culex pipiens
CpipJ_CPIJ007409
N
0.722
CRE02519
Caenorhabditis remanei
CRE02519
N
0.722
CPIJ007409
Culex quinquefasciatus
CPIJ007409
N
0.722
CJA28002
Caenorhabditis japonica
CJA28002
N
0.722
CJA00955
Caenorhabditis japonica
CJA00955
N
0.722
CJA02757
Caenorhabditis japonica
CJA02757
N
0.722
CJA17118
Caenorhabditis japonica
CJA17118
N
0.722
CJA15515
Caenorhabditis japonica
CJA15515
N
0.722
CJA10256
Caenorhabditis japonica
CJA10256
N
0.722
CJA26989
Caenorhabditis japonica
CJA26989
N
0.722
CJA17240
Caenorhabditis japonica
CJA17240
N
0.722