CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CRE19609
(
Caenorhabditis remanei
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CRE19609
T09890_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE19609
CCHC ZF
91
106
LKCFTCGGVGHMSRQC
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis remanei
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CRE30341
Caenorhabditis remanei
CRE30341
N
1.000
CJA26146
Caenorhabditis japonica
CJA26146
N
0.833
CJA02670
Caenorhabditis japonica
CJA02670
N
0.778
CPIJ007409
Culex quinquefasciatus
CPIJ007409
N
0.722
CJA29053
Caenorhabditis japonica
CJA29053
N
0.722
CRE03331
Caenorhabditis remanei
CRE03331
N
0.722
CRE09308
Caenorhabditis remanei
CRE09308
N
0.722
CRE13684
Caenorhabditis remanei
CRE13684
N
0.722
CRE29150
Caenorhabditis remanei
CRE29150
N
0.722
CRE06628
Caenorhabditis remanei
CRE06628
N
0.722
CJA27243
Caenorhabditis japonica
CJA27243
N
0.722
CJA05078
Caenorhabditis japonica
CJA05078
N
0.722
CpipJ_CPIJ007409
Culex pipiens
CpipJ_CPIJ007409
N
0.722
CJA11030
Caenorhabditis japonica
CJA11030
N
0.722
CJA10177
Caenorhabditis japonica
CJA10177
N
0.722
CJA23650
Caenorhabditis japonica
CJA23650
N
0.722
CJA15447
Caenorhabditis japonica
CJA15447
N
0.722
CRE19006
Caenorhabditis remanei
CRE19006
N
0.706
CRE08346
Caenorhabditis remanei
CRE08346
N
0.706
CRE13664
Caenorhabditis remanei
CRE13664
N
0.706
CRE24570
Caenorhabditis remanei
CRE24570
N
0.706