CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTTG_10344
(
Puccinia triticina
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PTTG_10344
T08473_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PTTG_10344T0
CCHC ZF
274
291
GQCFYCGEKGHLARGCPK
Links
Other
CCHC ZF
family RBPs
Other
Puccinia triticina
RBPs
37 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTTG_06000
Puccinia triticina
PTTG_06000
N
0.944
PTTG_08342
Puccinia triticina
PTTG_08342
N
0.944
PTTG_06629
Puccinia triticina
PTTG_06629
N
0.944
PTTG_05310
Puccinia triticina
PTTG_05310
N
0.889
PTTG_05127
Puccinia triticina
PTTG_05127
N
0.889
PTTG_08329
Puccinia triticina
PTTG_08329
N
0.889
PTTG_09062
Puccinia triticina
PTTG_09062
N
0.889
PTTG_09697
Puccinia triticina
PTTG_09697
N
0.889
PTTG_10004
Puccinia triticina
PTTG_10004
N
0.889
PTTG_07053
Puccinia triticina
PTTG_07053
N
0.833
PTTG_04681
Puccinia triticina
PTTG_04681
N
0.833
PTTG_06677
Puccinia triticina
PTTG_06677
N
0.833
PTTG_03581
Puccinia triticina
PTTG_03581
N
0.833
PTTG_01003
Puccinia triticina
PTTG_01003
N
0.833
PTTG_10119
Puccinia triticina
PTTG_10119
N
0.833
PTTG_09070
Puccinia triticina
PTTG_09070
N
0.833
CC1G_11952
Coprinopsis cinerea
CC1G_11952
N
0.778
PTTG_10688
Puccinia triticina
PTTG_10688
N
0.778
PTTG_03611
Puccinia triticina
PTTG_03611
N
0.778
PTTG_08960
Puccinia triticina
PTTG_08960
N
0.778
PTTG_05245
Puccinia triticina
PTTG_05245
N
0.778
PTTG_10706
Puccinia triticina
PTTG_10706
N
0.778
PTTG_09362
Puccinia triticina
PTTG_09362
N
0.722
PTTG_08980
Puccinia triticina
PTTG_08980
N
0.722
PTTG_10291
Puccinia triticina
PTTG_10291
N
0.722
PTTG_05279
Puccinia triticina
PTTG_05279
N
0.722
LOC_Os10g20570
Oryza sativa
LOC_Os10g20570
N
0.722
ENSGACG00000013495
Gasterosteus aculeatus
ENSGACG00000013495
N
0.722
ENSGACG00000001944
Gasterosteus aculeatus
ENSGACG00000001944
N
0.722
PTTG_11204
Puccinia triticina
PTTG_11204
N
0.722
TcIL3000.0.47130
Trypanosoma congolense
TcIL3000.0.47130
N
0.722
TcIL3000.0.60500
Trypanosoma congolense
TcIL3000.0.60500
N
0.722
PTTG_05476
Puccinia triticina
PTTG_05476
N
0.722
PTTG_10464
Puccinia triticina
PTTG_10464
N
0.722
CPSG_04175
Coccidioides posadasii
CPSG_04175
N
0.722
CIMG_13627
Coccidioides immitis
CIMG_13627
N
0.722
PTTG_07232
Puccinia triticina
PTTG_07232
N
0.722