CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RO3G_03632
(
Rhizopus oryzae
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
RO3G_03632
T08525_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
RO3T_03631
CCHC ZF
96
112
VCFKCGQPGHWIYYCPN
Links
Other
CCHC ZF
family RBPs
Other
Rhizopus oryzae
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgeneshMC_pg.C_40705
Mucor circinelloides
estExt_fgeneshMC_pg.C_40705
N
0.941
fgeneshPB_pg.2__433
Phycomyces blakesleeanus
fgeneshPB_pg.2__433
N
0.882
Smp_039640
Schistosoma mansoni
Smp_039640
N
0.706
NCBI_GNO_0100356
Daphnia pulex
NCBI_GNO_0100356
N
0.706
EBI_27443
Enterocytozoon bieneusi
EBI_27443
N
0.706
UM00321
Ustilago maydis
UM00321
N
0.706