CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgeneshPB_pg.2__433
(
Phycomyces blakesleeanus
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
fgeneshPB_pg.2__433
T14426_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgeneshPB_pg.2__433
CCHC ZF
107
123
VCFKCGQPGHWIYYCTS
Links
Other
CCHC ZF
family RBPs
Other
Phycomyces blakesleeanus
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RO3G_03632
Rhizopus oryzae
RO3G_03632
N
0.882
estExt_fgeneshMC_pg.C_40705
Mucor circinelloides
estExt_fgeneshMC_pg.C_40705
N
0.824