cassava11142.m1 (Manihot esculenta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 cassava11142.m1 T13341_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava11142.m1 CCHC ZF 262 277

Links

Other CCHC ZF family RBPs
Other Manihot esculenta RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava6289.valid.m1 Manihot esculenta cassava6289.valid.m1 N 1.000
cassava6287.valid.m1 Manihot esculenta cassava6287.valid.m1 N 1.000
B9GQW8_POPTR Populus trichocarpa POPTR_0002s02570 N 1.000
cassava11143.m1 Manihot esculenta cassava11143.m1 N 1.000
30170.m014167 Ricinus communis 30170.m014167 N 1.000
cassava11141.m1 Manihot esculenta cassava11141.m1 N 1.000
cassava11150.m1 Manihot esculenta cassava11150.m1 N 1.000
cassava6288.valid.m1 Manihot esculenta cassava6288.valid.m1 N 1.000
cassava11146.m1 Manihot esculenta cassava11146.m1 N 1.000
cassava11145.m1 Manihot esculenta cassava11145.m1 N 1.000
cassava11144.m1 Manihot esculenta cassava11144.m1 N 1.000
cassava11149.m1 Manihot esculenta cassava11149.m1 N 1.000
cassava11147.m1 Manihot esculenta cassava11147.m1 N 1.000
cassava11148.m1 Manihot esculenta cassava11148.m1 N 1.000
GSVIVG00009879001 Vitis vinifera GSVIVG00009879001 N 0.938
ppa000605m Prunus persica ppa000605m N 0.938
PK11796.1 Cannabis sativa PK11796.1 N 0.938
PDK_20s1387941g001 Phoenix dactylifera PDK_20s1387941g001 N 0.889
SB03G010040 Sorghum bicolor Sb03g010040 N 0.875
SB07G005160 Sorghum bicolor Sb07g005160 N 0.875
LOC_Os01g65220 Oryza sativa LOC_Os01g65220 N 0.875
XM_002865463.1 Arabidopsis lyrata scaffold_800897.1 N 0.875
BGIOSIBCE004440 Oryza indica BGIOSIBCE004440 N 0.875
GRMZM2G121404 Zea mays GRMZM2G121404 N 0.875
Glyma14g40510.1 Glycine max Glyma14g40510.1 N 0.875
GRMZM2G064868 Zea mays GRMZM2G064868 N 0.875
Medtr4g079110 Medicago truncatula Medtr4g079110 N 0.875
Cucsa.033870 Cucumis sativus Cucsa.033870 N 0.875
Glyma17g37650.1 Glycine max Glyma17g37650.1 N 0.875
mgf002253m Mimulus guttatus mgf002253m N 0.875
XRN2 Arabidopsis thaliana AT5G42540-TAIR-G N 0.812
B9H4V3_POPTR Populus trichocarpa POPTR_0005s25870 N 0.812
BRADI2G56440 Brachypodium distachyon BRADI2G56440 N 0.812
MDP0000206000 Malus x domestica MDP0000206000 N 0.812
MDP0000941174 Malus x domestica MDP0000941174 N 0.812
POPTR_0005s05060 Populus trichocarpa POPTR_0005s05060 N 0.778
Glyma10g30150.1 Glycine max Glyma10g30150.1 N 0.778
B9I8A8_POPTR Populus trichocarpa POPTR_0030s00400 N 0.778
Glyma20g37260.1 Glycine max Glyma20g37260.1 N 0.778
30128.m008637 Ricinus communis 30128.m008637 N 0.722
SB01G005340 Sorghum bicolor Sb01g005340 N 0.722
LOC_Os03g58060 Oryza sativa LOC_Os03g58060 N 0.722
MDP0000214139 Malus x domestica MDP0000214139 N 0.722
chr5.LjT15D05.170.nd Lotus japonicus chr5.LjT15D05.170.nd N 0.722
Medtr1g096550 Medicago truncatula Medtr1g096550 N 0.722
GRMZM2G099630 Zea mays GRMZM2G099630 N 0.722
mgf012893m Mimulus guttatus mgf012893m N 0.722
MDP0000127462 Malus x domestica MDP0000127462 N 0.722
MDP0000274866 Malus x domestica MDP0000274866 N 0.722
BGIOSIBCE013267 Oryza indica BGIOSIBCE013267 N 0.722
BRADI1G05660 Brachypodium distachyon BRADI1G05660 N 0.722
ppa000881m Prunus persica ppa000881m N 0.722
PDK_20s1898261g001 Phoenix dactylifera PDK_20s1898261g001 N 0.722
PK07279.1 Cannabis sativa PK07279.1 N 0.706