CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA03993
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA03993
T09649_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA03993
CCHC ZF
156
173
MKCYNCEGVGHIAKQCTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA09584
Caenorhabditis japonica
CJA09584
N
0.833
CJA12868
Caenorhabditis japonica
CJA12868
N
0.833
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.778
CRE29150
Caenorhabditis remanei
CRE29150
N
0.722
CRE03331
Caenorhabditis remanei
CRE03331
N
0.722
CRE06628
Caenorhabditis remanei
CRE06628
N
0.722