CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBG08763
(
Caenorhabditis briggsae
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CBG08763
T09576_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG08763
CCHC ZF
494
511
KKCFNCGGVGHIARQCTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis briggsae
RBPs
62 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA28002
Caenorhabditis japonica
CJA28002
N
0.833
CJA15515
Caenorhabditis japonica
CJA15515
N
0.833
CJA02757
Caenorhabditis japonica
CJA02757
N
0.833
CJA29053
Caenorhabditis japonica
CJA29053
N
0.778
CJA12868
Caenorhabditis japonica
CJA12868
N
0.778
CRE02519
Caenorhabditis remanei
CRE02519
N
0.778
CRE03331
Caenorhabditis remanei
CRE03331
N
0.778
CJA13503
Caenorhabditis japonica
CJA13503
N
0.778
CJA13676
Caenorhabditis japonica
CJA13676
N
0.778
CJA18092
Caenorhabditis japonica
CJA18092
N
0.778
CJA21290
Caenorhabditis japonica
CJA21290
N
0.778
CRE06628
Caenorhabditis remanei
CRE06628
N
0.778
CJA28132
Caenorhabditis japonica
CJA28132
N
0.778
CJA26146
Caenorhabditis japonica
CJA26146
N
0.778
CJA13138
Caenorhabditis japonica
CJA13138
N
0.778
CRE29150
Caenorhabditis remanei
CRE29150
N
0.778
CJA00955
Caenorhabditis japonica
CJA00955
N
0.778
CRE11513
Caenorhabditis remanei
CRE11513
N
0.778
CJA03993
Caenorhabditis japonica
CJA03993
N
0.778
CJA07934
Caenorhabditis japonica
CJA07934
N
0.778
CJA09584
Caenorhabditis japonica
CJA09584
N
0.778
CJA24356
Caenorhabditis japonica
CJA24356
N
0.722
CJA24410
Caenorhabditis japonica
CJA24410
N
0.722
CJA23880
Caenorhabditis japonica
CJA23880
N
0.722
CJA23793
Caenorhabditis japonica
CJA23793
N
0.722
CJA23492
Caenorhabditis japonica
CJA23492
N
0.722
CRE24570
Caenorhabditis remanei
CRE24570
N
0.722
CJA23650
Caenorhabditis japonica
CJA23650
N
0.722
CJA27741
Caenorhabditis japonica
CJA27741
N
0.722
CRE13664
Caenorhabditis remanei
CRE13664
N
0.722
CRE09308
Caenorhabditis remanei
CRE09308
N
0.722
CJA23027
Caenorhabditis japonica
CJA23027
N
0.722
CRE13684
Caenorhabditis remanei
CRE13684
N
0.722
CRE19006
Caenorhabditis remanei
CRE19006
N
0.722
CJA27243
Caenorhabditis japonica
CJA27243
N
0.722
CRE08346
Caenorhabditis remanei
CRE08346
N
0.722
CJA25140
Caenorhabditis japonica
CJA25140
N
0.722
CJA18651
Caenorhabditis japonica
CJA18651
N
0.722
CJA10177
Caenorhabditis japonica
CJA10177
N
0.722
CJA05814
Caenorhabditis japonica
CJA05814
N
0.722
CJA11030
Caenorhabditis japonica
CJA11030
N
0.722
CJA12566
Caenorhabditis japonica
CJA12566
N
0.722
CJA12763
Caenorhabditis japonica
CJA12763
N
0.722
CJA05078
Caenorhabditis japonica
CJA05078
N
0.722
CJA03777
Caenorhabditis japonica
CJA03777
N
0.722
CJA00265
Caenorhabditis japonica
CJA00265
N
0.722
CJA00525
Caenorhabditis japonica
CJA00525
N
0.722
CJA02546
Caenorhabditis japonica
CJA02546
N
0.722
CJA02670
Caenorhabditis japonica
CJA02670
N
0.722
CJA13245
Caenorhabditis japonica
CJA13245
N
0.722
CJA14117
Caenorhabditis japonica
CJA14117
N
0.722
CJA19647
Caenorhabditis japonica
CJA19647
N
0.722
CJA21035
Caenorhabditis japonica
CJA21035
N
0.722
CJA21076
Caenorhabditis japonica
CJA21076
N
0.722
CJA21786
Caenorhabditis japonica
CJA21786
N
0.722
CJA00142
Caenorhabditis japonica
CJA00142
N
0.722
CJA17739
Caenorhabditis japonica
CJA17739
N
0.722
CJA15447
Caenorhabditis japonica
CJA15447
N
0.722
CJA17118
Caenorhabditis japonica
CJA17118
N
0.722
CJA17375
Caenorhabditis japonica
CJA17375
N
0.722
CJA17448
Caenorhabditis japonica
CJA17448
N
0.722
CJA22105
Caenorhabditis japonica
CJA22105
N
0.722