CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CRE06628
(
Caenorhabditis remanei
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CRE06628
T09843_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE06628
CCHC ZF
573
590
RKCFNCGGVGHMSKQCTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis remanei
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CRE29150
Caenorhabditis remanei
CRE29150
N
1.000
CRE03331
Caenorhabditis remanei
CRE03331
N
1.000
CJA11030
Caenorhabditis japonica
CJA11030
N
0.833
CJA26146
Caenorhabditis japonica
CJA26146
N
0.833
CJA05078
Caenorhabditis japonica
CJA05078
N
0.833
CRE13684
Caenorhabditis remanei
CRE13684
N
0.778
CJA10177
Caenorhabditis japonica
CJA10177
N
0.778
CJA12868
Caenorhabditis japonica
CJA12868
N
0.778
CRE09308
Caenorhabditis remanei
CRE09308
N
0.778
CJA23650
Caenorhabditis japonica
CJA23650
N
0.778
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.778
CJA09584
Caenorhabditis japonica
CJA09584
N
0.778
CJA29053
Caenorhabditis japonica
CJA29053
N
0.778
CJA27243
Caenorhabditis japonica
CJA27243
N
0.778
CJA02670
Caenorhabditis japonica
CJA02670
N
0.778
CJA21035
Caenorhabditis japonica
CJA21035
N
0.722
CJA18092
Caenorhabditis japonica
CJA18092
N
0.722
CJA21290
Caenorhabditis japonica
CJA21290
N
0.722
CJA28132
Caenorhabditis japonica
CJA28132
N
0.722
CJA17739
Caenorhabditis japonica
CJA17739
N
0.722
CJA28002
Caenorhabditis japonica
CJA28002
N
0.722
CJA13138
Caenorhabditis japonica
CJA13138
N
0.722
CJA02757
Caenorhabditis japonica
CJA02757
N
0.722
CJA00525
Caenorhabditis japonica
CJA00525
N
0.722
CRE30341
Caenorhabditis remanei
CRE30341
N
0.722
CRE19609
Caenorhabditis remanei
CRE19609
N
0.722
CJA03993
Caenorhabditis japonica
CJA03993
N
0.722
CJA07934
Caenorhabditis japonica
CJA07934
N
0.722
CJA15515
Caenorhabditis japonica
CJA15515
N
0.722
CJA15447
Caenorhabditis japonica
CJA15447
N
0.722
CJA14117
Caenorhabditis japonica
CJA14117
N
0.722
CJA13676
Caenorhabditis japonica
CJA13676
N
0.722
CJA17375
Caenorhabditis japonica
CJA17375
N
0.722