CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
Recql4
(
Dipodomys ordii
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSDORG00000002297
T10127_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000002158
CCHC ZF
392
409
DSCFQCGKLGHWASHCPQ
Links
Other
CCHC ZF
family RBPs
Other
Dipodomys ordii
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSSSCG00000005884
Sus scrofa
ENSSSCG00000005884
N
0.833
ENSSSCG00000005898
Sus scrofa
ENSSSCG00000005898
N
0.833
ENSOPRG00000002588
Ochotona princeps
ENSOPRG00000002588
N
0.833
ENSPVAG00000006784
Pteropus vampyrus
ENSPVAG00000006784
N
0.833
ENSEEUG00000005223
Erinaceus europaeus
ENSEEUG00000005223
N
0.778
ENSMLUG00000011295
Myotis lucifugus
ENSMLUG00000011295
N
0.778
ENSSARG00000013351
Sorex araneus
ENSSARG00000013351
N
0.778
ENSDNOG00000002674
Dasypus novemcinctus
ENSDNOG00000002674
N
0.778
ENSCAFG00000001569
Canis familiaris
ENSCAFG00000001569
N
0.778
ENSLAFG00000009512
Loxodonta africana
ENSLAFG00000009512
N
0.722
ENSECAG00000018665
Equus caballus
ENSECAG00000018665
N
0.722