CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSSSCG00000005898
(
Sus scrofa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSSSCG00000005898
T10476_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000006306
CCHC ZF
393
410
DSCFRCGQLGHWASQCPQ
Links
Other
CCHC ZF
family RBPs
Other
Sus scrofa
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPVAG00000006784
Pteropus vampyrus
ENSPVAG00000006784
N
1.000
ENSSSCG00000005884
Sus scrofa
ENSSSCG00000005884
N
1.000
ENSCAFG00000001569
Canis familiaris
ENSCAFG00000001569
N
0.944
ENSMLUG00000011295
Myotis lucifugus
ENSMLUG00000011295
N
0.944
ENSLAFG00000009512
Loxodonta africana
ENSLAFG00000009512
N
0.889
ENSDNOG00000002674
Dasypus novemcinctus
ENSDNOG00000002674
N
0.889
ENSOPRG00000002588
Ochotona princeps
ENSOPRG00000002588
N
0.889
ENSSARG00000013351
Sorex araneus
ENSSARG00000013351
N
0.833
Recql4
Rattus norvegicus
ENSRNOG00000032446
N
0.833
ENSECAG00000018665
Equus caballus
ENSECAG00000018665
N
0.833
Recql4
Mus musculus
ENSMUSG00000033762
N
0.833
Recql4
Dipodomys ordii
ENSDORG00000002297
N
0.833
AAY89585
Xenopus laevis
AAY89585
N
0.778
AAI61707
Xenopus laevis
AAI61707
N
0.778
recql4
Xenopus tropicalis
ENSXETG00000016582
N
0.778
ENSTSYG00000012090
Tarsius syrichta
ENSTSYG00000012090
N
0.778
ENSMODG00000011014
Monodelphis domestica
ENSMODG00000011014
N
0.778
BAE48358
Xenopus laevis
BAE48358
N
0.778
ENSMEUG00000001818
Macropus eugenii
ENSMEUG00000001818
N
0.778
LOC_Os04g19930
Oryza sativa
LOC_Os04g19930
N
0.722
ENSEEUG00000005223
Erinaceus europaeus
ENSEEUG00000005223
N
0.722
fgenesh2_pg.6_#_9
Fragilariopsis cylindrus
fgenesh2_pg.6_#_9
N
0.722
ENSACAG00000010589
Anolis carolinensis
ENSACAG00000010589
N
0.722
eugene.1400010243
Ostreococcus lucimarinus
eugene.1400010243
N
0.722