cassava28473.m1 (Manihot esculenta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 cassava28473.m1 T13387_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava28473.m1 CCHC ZF 1 17

Links

Other CCHC ZF family RBPs
Other Manihot esculenta RBPs

7 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava9003.m1 Manihot esculenta cassava9003.m1 N 0.824
cassava28757.m1 Manihot esculenta cassava28757.m1 N 0.765
Minc00264 Meloidogyne incognita Minc00264 N 0.765
POPTR_0005s17220 Populus trichocarpa POPTR_0005s17220 N 0.722
LOC_Os11g24270 Oryza sativa LOC_Os11g24270 N 0.706
LOC_Os09g09400 Oryza sativa LOC_Os09g09400 N 0.706
cassava45661.m1 Manihot esculenta cassava45661.m1 N 0.706